JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARID3B_chr15_74536220_74603131	0/0	c0005	1683	2	0	2	0	0	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	c0006	1683	2	0	0	2	0	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	c0007	1683	1	1	0	0	0	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	c0008	1683	1	0	1	0	0	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	c0009	1683	1	0	0	0	0	1	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	c0010	1683	1	1	0	0	0	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	c0011	1683	1	0	1	0	0	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	c0012	1683	1	0	0	1	0	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	c0013	1683	1	0	0	1	0	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3B_chr15_74536220_74603131	0/0	c0014	1683	1	0	0	0	1	0	copy fasta	ARID3B	chr15	74536220	74603131
ARID3C_chr9_34616049_34634066	0/0	c0001	1239	218	39	49	100	6	24	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	1/0	c0002	1239	114	16	8	76	3	10	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/1	c0003	1239	53	10	19	10	5	8	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/0	c0004	1239	25	24	1	0	0	0	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/0	c0005	1239	4	4	0	0	0	0	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/0	c0006	1239	2	0	0	2	0	0	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/0	c0007	1239	2	0	0	0	2	0	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/0	c0008	1239	2	0	0	2	0	0	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/0	c0009	1239	1	0	1	0	0	0	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/0	c0010	1239	1	0	1	0	0	0	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/0	c0011	1239	1	1	0	0	0	0	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/0	c0012	1239	1	0	1	0	0	0	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/0	c0013	1239	1	0	0	1	0	0	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/0	c0014	1239	1	1	0	0	0	0	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/0	c0015	1239	1	0	0	1	0	0	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/0	c0016	1239	1	1	0	0	0	0	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/0	c0017	1239	1	1	0	0	0	0	copy fasta	ARID3C	chr9	34616049	34634066
ARID3C_chr9_34616049_34634066	0/0	c0018	1239	1	1	0	0	0	0	copy fasta	ARID3C	chr9	34616049	34634066
ARID4A_chr14_58293555_58378876	0/1	c0001	3774	146	26	29	66	6	18	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	c0002	3774	86	21	6	52	1	6	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	1/0	c0003	3774	32	18	6	1	1	5	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	c0004	3774	6	6	0	0	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	c0005	3774	5	1	1	0	0	3	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	c0006	3774	3	3	0	0	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	c0007	3774	2	0	1	0	1	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	c0008	3774	2	1	1	0	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	c0009	3774	2	1	1	0	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	c0010	3774	1	0	0	0	1	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	c0011	3774	1	0	1	0	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	c0012	3774	1	1	0	0	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	c0013	3774	1	1	0	0	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	c0014	3774	1	0	0	1	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	c0015	3774	1	0	0	1	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	c0016	3774	1	1	0	0	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	c0017	3774	1	0	0	1	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	c0018	3774	1	0	0	1	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4A_chr14_58293555_58378876	0/0	c0019	3774	1	0	0	1	0	0	copy fasta	ARID4A	chr14	58293555	58378876
ARID4B_chr1_235161902_235333179	1/1	c0001	3939	114	25	21	48	4	14	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	c0002	3939	98	8	22	47	4	17	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	c0003	3939	20	16	4	0	0	0	copy fasta	ARID4B	chr1	235161902	235333179