JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLEKHG5_chr1_6462122_6496667	0/0	c0023	3021	1	0	0	0	0	1	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0024	3021	1	0	0	0	0	1	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0025	3021	1	0	0	1	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0026	3021	1	0	0	1	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0027	3021	1	1	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0028	3018	1	0	0	0	1	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0029	3021	1	1	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0030	3021	1	1	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0031	3021	1	1	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0032	3021	1	1	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0033	3018	1	1	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0034	3021	1	1	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0035	3018	1	1	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0036	3057	1	1	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0037	3015	1	1	0	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0038	3021	1	0	0	0	0	1	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG5_chr1_6462122_6496667	0/0	c0039	3021	1	0	1	0	0	0	copy fasta	PLEKHG5	chr1	6462122	6496667
PLEKHG6_chr12_6305682_6333506	1/0	c0001	2373	243	44	46	118	8	26	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/1	c0002	2373	142	23	28	66	8	16	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	c0003	2373	25	20	2	2	0	1	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	c0004	2373	11	0	0	9	0	2	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	c0005	2373	7	7	0	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	c0006	2373	5	0	0	5	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	c0007	2373	3	1	2	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	c0008	2373	2	0	0	2	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	c0009	2373	1	1	0	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	c0010	2373	1	1	0	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	c0011	2373	1	1	0	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	c0012	2373	1	0	0	1	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	c0013	2373	1	0	0	0	0	1	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	c0014	2373	1	0	0	1	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	c0015	2373	1	1	0	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	c0016	2373	1	1	0	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	c0017	2373	1	0	1	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG6_chr12_6305682_6333506	0/0	c0018	2373	1	0	1	0	0	0	copy fasta	PLEKHG6	chr12	6305682	6333506
PLEKHG7_chr12_92697989_92777455	0/0	c0001	2076	89	18	20	32	5	14	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/1	c0002	2076	50	20	9	10	4	6	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	1/0	c0003	2076	34	7	9	6	5	6	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	c0004	2076	15	14	1	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	c0005	2076	8	2	3	0	0	3	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	c0006	2076	8	0	8	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	c0007	2076	7	5	1	0	0	1	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	c0008	2076	6	0	1	0	1	4	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	c0009	2076	6	6	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	c0010	2076	5	5	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	c0011	2076	2	2	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	c0012	2076	2	0	0	0	0	2	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	c0013	2076	2	2	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	c0014	2076	2	2	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	c0015	2076	2	0	0	0	1	1	copy fasta	PLEKHG7	chr12	92697989	92777455