JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLEKHG7_chr12_92697989_92777455	0/0	c0016	2076	1	1	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	c0017	2076	1	1	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	c0018	2076	1	0	0	1	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	c0019	2118	1	0	0	0	0	1	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	c0020	2076	1	1	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	c0021	2076	1	1	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	c0022	2076	1	0	0	1	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	c0023	2076	1	1	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	c0024	2076	1	1	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	c0025	2076	1	1	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	c0026	2076	1	1	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	c0027	2076	1	1	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	c0028	2076	1	1	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHG7_chr12_92697989_92777455	0/0	c0029	2076	1	1	0	0	0	0	copy fasta	PLEKHG7	chr12	92697989	92777455
PLEKHH1_chr14_67528290_67594612	0/0	c0001	4095	49	1	12	26	4	6	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0002	4095	34	3	9	19	2	1	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	1/0	c0003	4095	30	22	4	3	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0004	4095	29	2	2	19	1	5	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0005	4095	20	2	4	7	0	7	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0006	4095	20	0	2	13	3	2	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0007	4095	14	0	0	14	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0008	4095	13	1	9	2	0	1	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0009	4095	11	0	0	11	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0010	4095	10	2	1	4	0	3	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0011	4095	10	0	2	5	0	3	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0012	4095	8	0	0	8	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0013	4095	8	0	2	4	0	2	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0014	4095	8	0	2	6	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0015	4095	8	0	0	8	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0016	4095	7	7	0	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/1	c0017	4095	6	0	0	5	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0018	4095	6	0	1	4	0	1	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0019	4095	5	4	1	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0020	4095	5	5	0	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0021	4095	4	0	3	0	0	1	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0022	4095	4	1	1	0	0	2	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0023	4095	4	4	0	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0024	4095	4	3	1	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0025	4095	4	0	0	1	0	3	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0026	4095	4	1	1	1	0	1	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0027	4095	4	0	3	0	1	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0028	4095	3	3	0	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0029	4095	3	2	1	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0030	4095	3	0	1	1	0	1	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0031	4095	3	3	0	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0032	4095	3	0	0	3	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0033	4095	3	3	0	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0034	4095	2	2	0	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0035	4095	2	1	1	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612
PLEKHH1_chr14_67528290_67594612	0/0	c0036	4095	2	2	0	0	0	0	copy fasta	PLEKHH1	chr14	67528290	67594612