JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLEKHH2_chr2_43632260_43772987	0/0	c0051	4482	1	0	1	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	c0052	4479	1	1	0	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	c0053	4482	1	1	0	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	c0054	4482	1	1	0	0	0	0	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	c0055	4482	1	0	0	0	0	1	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH2_chr2_43632260_43772987	0/0	c0056	4482	1	0	0	0	0	1	copy fasta	PLEKHH2	chr2	43632260	43772987
PLEKHH3_chr17_42662914_42681994	0/0	c0001	2382	244	75	60	70	9	30	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	0/1	c0002	2382	88	2	9	68	1	7	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	0/0	c0003	2382	6	1	5	0	0	0	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	0/0	c0004	2382	4	4	0	0	0	0	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	0/0	c0005	2382	4	0	0	4	0	0	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	1/0	c0006	2382	3	0	0	0	1	1	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	0/0	c0007	2382	3	0	0	3	0	0	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	0/0	c0008	2382	2	1	1	0	0	0	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	0/0	c0009	2382	1	0	1	0	0	0	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	0/0	c0010	2382	1	0	0	1	0	0	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	0/0	c0011	2382	1	0	0	1	0	0	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	0/0	c0012	2382	1	1	0	0	0	0	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	0/0	c0013	2382	1	0	0	1	0	0	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	0/0	c0014	2382	1	1	0	0	0	0	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	0/0	c0015	2382	1	0	0	0	1	0	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHH3_chr17_42662914_42681994	0/0	c0016	2382	1	1	0	0	0	0	copy fasta	PLEKHH3	chr17	42662914	42681994
PLEKHJ1_chr19_2228153_2241329	1/1	c0001	450	422	93	81	186	16	44	copy fasta	PLEKHJ1	chr19	2228153	2241329
PLEKHJ1_chr19_2228153_2241329	0/0	c0002	450	1	0	0	1	0	0	copy fasta	PLEKHJ1	chr19	2228153	2241329
PLEKHJ1_chr19_2228153_2241329	0/0	c0003	450	1	0	0	1	0	0	copy fasta	PLEKHJ1	chr19	2228153	2241329
PLEKHJ1_chr19_2228153_2241329	0/0	c0004	450	1	0	1	0	0	0	copy fasta	PLEKHJ1	chr19	2228153	2241329
PLEKHJ1_chr19_2228153_2241329	0/0	c0005	450	1	1	0	0	0	0	copy fasta	PLEKHJ1	chr19	2228153	2241329
PLEKHM1_chr17_45430900_45495721	0/1	c0001	3171	284	75	57	116	12	23	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	c0002	3171	20	2	8	1	4	5	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	c0003	3171	5	5	0	0	0	0	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	c0004	3171	5	5	0	0	0	0	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	c0005	3171	3	3	0	0	0	0	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	c0006	3171	1	0	0	0	0	1	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	c0007	3171	1	0	0	0	0	1	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	c0008	3171	1	0	0	1	0	0	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	c0009	3171	1	1	0	0	0	0	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	c0010	3171	1	0	1	0	0	0	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	c0011	3171	1	0	0	1	0	0	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	c0012	3171	1	0	0	1	0	0	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM1_chr17_45430900_45495721	0/0	c0013	3171	1	1	0	0	0	0	copy fasta	PLEKHM1	chr17	45430900	45495721
PLEKHM2_chr1_15679320_15739769	1/1	c0001	3060	187	16	47	92	10	20	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	c0002	3060	59	36	10	5	3	5	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	c0003	3060	16	11	5	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	c0004	3060	14	4	1	3	2	4	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	c0005	3060	13	2	2	8	0	1	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	c0006	3060	12	12	0	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	c0007	3060	6	2	1	0	1	2	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	c0008	3060	4	0	0	0	0	4	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	c0009	3060	3	0	0	0	1	2	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	c0010	3060	3	0	3	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769