JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLEKHM2_chr1_15679320_15739769	0/0	c0011	3060	2	0	0	2	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	c0012	3060	1	1	0	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	c0013	3060	1	1	0	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	c0014	3060	1	1	0	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	c0015	3060	1	1	0	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	c0016	3060	1	1	0	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	c0017	3060	1	0	0	0	0	1	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	c0018	3060	1	1	0	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	c0019	3060	1	1	0	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	c0020	3060	1	1	0	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	c0021	3060	1	0	0	0	1	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	c0022	3060	1	0	0	1	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	c0023	3060	1	0	1	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	c0024	3060	1	0	0	0	0	1	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	c0025	3060	1	0	0	0	0	1	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	c0026	3060	1	1	0	0	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	c0027	3060	1	0	0	0	0	1	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM2_chr1_15679320_15739769	0/0	c0028	3060	1	0	0	1	0	0	copy fasta	PLEKHM2	chr1	15679320	15739769
PLEKHM3_chr2_207816288_208030527	0/0	c0001	2286	66	25	9	15	7	10	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	c0002	2286	44	25	11	7	1	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	c0003	2286	38	11	13	6	6	2	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	1/1	c0004	2286	38	7	3	18	0	8	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	c0005	2286	3	2	1	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	c0006	2286	2	2	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	c0007	2286	1	0	1	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	c0008	2286	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	c0009	2286	1	0	0	1	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	c0010	2286	1	0	0	1	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	c0011	2286	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	c0012	2286	1	0	0	1	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	c0013	2286	1	0	0	1	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	c0014	2286	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHM3_chr2_207816288_208030527	0/0	c0015	2286	1	1	0	0	0	0	copy fasta	PLEKHM3	chr2	207816288	208030527
PLEKHN1_chr1_961482_980865	0/0	c0001	1836	130	19	23	66	3	19	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0002	1836	51	7	15	14	4	11	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	1/1	c0003	1836	31	5	16	2	3	3	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0004	1836	25	0	0	25	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0005	1836	16	5	3	2	2	4	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0006	1836	13	4	2	7	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0007	1836	13	0	1	9	0	3	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0008	1836	12	1	2	9	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0009	1836	11	11	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0010	1836	9	5	3	1	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0011	1836	8	7	1	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0012	1836	8	5	0	1	2	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0013	1836	8	0	8	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0014	1836	6	0	1	5	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0015	1836	5	4	1	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0016	1836	4	3	1	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0017	1836	4	3	0	1	0	0	copy fasta	PLEKHN1	chr1	961482	980865