JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLEKHN1_chr1_961482_980865	0/0	c0018	1836	4	0	0	4	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0019	1836	4	1	1	0	0	2	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0020	1836	4	2	0	2	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0021	1836	3	3	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0022	1836	3	0	0	3	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0023	1836	3	0	1	0	1	1	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0024	1836	3	3	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0025	1836	3	0	0	2	0	1	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0026	1836	2	2	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0027	1836	2	0	0	2	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0028	1836	2	0	0	1	0	1	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0029	1836	2	2	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0030	1836	2	0	0	2	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0031	1836	2	0	0	2	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0032	1836	2	0	0	2	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0033	1836	2	0	1	0	0	1	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0034	1836	1	0	1	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0035	1836	1	1	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0036	1836	1	0	0	0	0	1	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0037	1836	1	1	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0038	1836	1	1	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0039	1836	1	0	0	1	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0040	1836	1	0	1	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0041	1810	1	1	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0042	1836	1	0	0	1	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0043	1833	1	0	0	1	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0044	1836	1	0	0	1	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0045	1836	1	1	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0046	1836	1	0	0	0	0	1	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0047	1836	1	0	1	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0048	1828	1	0	0	0	1	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0049	1836	1	0	0	1	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0050	1836	1	1	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0051	1836	1	0	0	1	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0052	1836	1	0	0	1	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0053	1836	1	1	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0054	1836	1	0	1	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0055	1836	1	1	0	0	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0056	1836	1	0	0	1	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0057	1836	1	0	0	1	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHN1_chr1_961482_980865	0/0	c0058	1836	1	0	0	1	0	0	copy fasta	PLEKHN1	chr1	961482	980865
PLEKHO1_chr1_150144916_150165065	1/1	c0001	1230	394	91	76	170	16	39	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO1_chr1_150144916_150165065	0/0	c0002	1230	18	0	0	18	0	0	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO1_chr1_150144916_150165065	0/0	c0003	1230	5	5	0	0	0	0	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO1_chr1_150144916_150165065	0/0	c0004	1230	3	0	0	3	0	0	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO1_chr1_150144916_150165065	0/0	c0005	1230	1	0	0	0	0	1	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO1_chr1_150144916_150165065	0/0	c0006	1230	1	0	0	1	0	0	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO1_chr1_150144916_150165065	0/0	c0007	1230	1	0	0	0	0	1	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO1_chr1_150144916_150165065	0/0	c0008	1230	1	0	0	1	0	0	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO1_chr1_150144916_150165065	0/0	c0009	1230	1	0	0	1	0	0	copy fasta	PLEKHO1	chr1	150144916	150165065