JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLEKHO1_chr1_150144916_150165065	0/0	c0010	1230	1	0	0	0	0	1	copy fasta	PLEKHO1	chr1	150144916	150165065
PLEKHO2_chr15_64836915_64873002	1/1	c0001	1473	198	76	40	37	10	33	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	c0002	1473	91	9	11	62	0	9	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	c0003	1473	12	5	1	6	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	c0004	1473	5	0	3	0	0	2	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	c0005	1473	4	4	0	0	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	c0006	1473	2	0	2	0	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	c0007	1473	2	0	1	0	0	1	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	c0008	1473	1	1	0	0	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	c0009	1473	1	1	0	0	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	c0010	1473	1	0	0	1	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	c0011	1473	1	1	0	0	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	c0012	1473	1	1	0	0	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	c0013	1473	1	0	0	0	0	1	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	c0014	1473	1	0	1	0	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHO2_chr15_64836915_64873002	0/0	c0015	1473	1	0	1	0	0	0	copy fasta	PLEKHO2	chr15	64836915	64873002
PLEKHS1_chr10_113746682_113788429	1/0	c0001	1407	157	54	19	66	5	12	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/1	c0002	1407	89	7	21	53	3	4	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	c0003	1407	84	3	24	41	3	13	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	c0004	1407	39	2	11	13	4	9	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	c0005	1407	7	7	0	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	c0006	1407	6	1	0	5	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	c0007	1407	5	0	0	5	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	c0008	1407	4	0	3	0	1	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	c0009	1407	3	3	0	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	c0010	1407	2	0	0	2	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	c0011	1407	2	2	0	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	c0012	1407	1	1	0	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	c0013	1407	1	1	0	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	c0014	1407	1	0	0	1	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEKHS1_chr10_113746682_113788429	0/0	c0015	1407	1	1	0	0	0	0	copy fasta	PLEKHS1	chr10	113746682	113788429
PLEK_chr2_68360282_68402453	0/0	c0001	1053	150	33	33	68	5	11	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	c0002	1053	81	19	14	34	5	9	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	1/1	c0003	1053	58	3	15	24	5	9	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	c0004	1053	54	28	10	11	3	2	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	c0005	1053	20	11	6	3	0	0	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	c0006	1053	5	0	0	0	0	5	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	c0007	1053	1	0	0	0	0	1	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	c0008	1053	1	0	0	0	0	1	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	c0009	1053	1	0	0	0	0	1	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	c0010	1053	1	0	0	0	0	1	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	c0011	1053	1	0	0	1	0	0	copy fasta	PLEK	chr2	68360282	68402453
PLEK_chr2_68360282_68402453	0/0	c0012	1053	1	0	0	1	0	0	copy fasta	PLEK	chr2	68360282	68402453
PLET1_chr11_112243153_112265860	0/1	c0001	624	231	30	50	105	9	36	copy fasta	PLET1	chr11	112243153	112265860
PLET1_chr11_112243153_112265860	1/0	c0002	624	110	50	12	36	3	8	copy fasta	PLET1	chr11	112243153	112265860
PLET1_chr11_112243153_112265860	0/0	c0003	624	7	0	5	0	0	2	copy fasta	PLET1	chr11	112243153	112265860
PLET1_chr11_112243153_112265860	0/0	c0004	625	6	5	1	0	0	0	copy fasta	PLET1	chr11	112243153	112265860
PLET1_chr11_112243153_112265860	0/0	c0005	624	5	3	2	0	0	0	copy fasta	PLET1	chr11	112243153	112265860
PLET1_chr11_112243153_112265860	0/0	c0006	624	2	2	0	0	0	0	copy fasta	PLET1	chr11	112243153	112265860
PLET1_chr11_112243153_112265860	0/0	c0007	624	2	0	0	2	0	0	copy fasta	PLET1	chr11	112243153	112265860