JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLET1_chr11_112243153_112265860	0/0	c0008	624	1	1	0	0	0	0	copy fasta	PLET1	chr11	112243153	112265860
PLET1_chr11_112243153_112265860	0/0	c0009	624	1	1	0	0	0	0	copy fasta	PLET1	chr11	112243153	112265860
PLET1_chr11_112243153_112265860	0/0	c0010	625	1	1	0	0	0	0	copy fasta	PLET1	chr11	112243153	112265860
PLET1_chr11_112243153_112265860	0/0	c0011	624	1	1	0	0	0	0	copy fasta	PLET1	chr11	112243153	112265860
PLET1_chr11_112243153_112265860	0/0	c0012	624	1	0	0	1	0	0	copy fasta	PLET1	chr11	112243153	112265860
PLGLB1_chr2_87005224_87026844	0/0	c0001	291	225	25	51	108	10	31	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB1_chr2_87005224_87026844	0/0	c0002	291	123	13	7	86	2	15	copy fasta	PLGLB1	chr2	87005224	87026844
PLGLB2_chr2_87743087_87764476	0/1	c0001	291	294	51	60	125	16	41	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	c0002	291	7	5	2	0	0	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	c0003	291	4	0	2	2	0	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	c0004	291	2	0	0	0	0	2	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	c0005	291	2	2	0	0	0	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	c0006	291	2	0	0	2	0	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	c0007	291	1	0	0	1	0	0	copy fasta	PLGLB2	chr2	87743087	87764476
PLGLB2_chr2_87743087_87764476	0/0	c0008	291	1	0	0	0	0	1	copy fasta	PLGLB2	chr2	87743087	87764476
PLGRKT_chr9_5352971_5442925	1/1	c0001	444	393	92	75	173	12	39	copy fasta	PLGRKT	chr9	5352971	5442925
PLGRKT_chr9_5352971_5442925	0/0	c0002	444	10	0	0	7	0	3	copy fasta	PLGRKT	chr9	5352971	5442925
PLGRKT_chr9_5352971_5442925	0/0	c0003	444	3	0	0	3	0	0	copy fasta	PLGRKT	chr9	5352971	5442925
PLGRKT_chr9_5352971_5442925	0/0	c0004	444	2	2	0	0	0	0	copy fasta	PLGRKT	chr9	5352971	5442925
PLGRKT_chr9_5352971_5442925	0/0	c0005	444	2	0	0	2	0	0	copy fasta	PLGRKT	chr9	5352971	5442925
PLGRKT_chr9_5352971_5442925	0/0	c0006	444	1	0	0	1	0	0	copy fasta	PLGRKT	chr9	5352971	5442925
PLGRKT_chr9_5352971_5442925	0/0	c0007	444	1	0	1	0	0	0	copy fasta	PLGRKT	chr9	5352971	5442925
PLGRKT_chr9_5352971_5442925	0/0	c0008	444	1	0	0	1	0	0	copy fasta	PLGRKT	chr9	5352971	5442925
PLGRKT_chr9_5352971_5442925	0/0	c0009	444	1	0	0	1	0	0	copy fasta	PLGRKT	chr9	5352971	5442925
PLG_chr6_160697244_160759097	0/1	c0001	2433	119	11	15	71	6	15	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	c0002	2433	89	6	20	52	1	10	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	c0003	2433	37	3	7	21	1	5	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	c0004	2433	29	8	16	0	3	2	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	1/0	c0005	2433	21	5	6	1	2	6	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	c0006	2433	19	19	0	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	c0007	2433	12	9	3	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	c0008	2433	8	8	0	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	c0009	2433	7	2	4	0	1	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	c0010	2433	4	4	0	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	c0011	2433	4	1	0	3	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	c0012	2433	4	4	0	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	c0013	2433	4	4	0	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	c0014	2433	3	0	0	3	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	c0015	2433	3	2	0	0	0	1	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	c0016	2433	2	0	0	0	0	2	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	c0017	2433	2	0	0	2	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	c0018	2433	2	0	2	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	c0019	2433	2	0	0	2	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	c0020	2433	2	0	2	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	c0021	2433	2	2	0	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	c0022	2433	1	0	1	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	c0023	2433	1	0	0	1	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	c0024	2433	1	1	0	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	c0025	2433	1	0	1	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	c0026	2433	1	0	1	0	0	0	copy fasta	PLG	chr6	160697244	160759097