JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLG_chr6_160697244_160759097	0/0	c0027	2433	1	1	0	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	c0028	2433	1	1	0	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	c0029	2433	1	1	0	0	0	0	copy fasta	PLG	chr6	160697244	160759097
PLG_chr6_160697244_160759097	0/0	c0030	2433	1	0	0	0	0	1	copy fasta	PLG	chr6	160697244	160759097
PLIN1_chr15_89659367_89684367	0/1	c0001	1569	206	54	34	96	8	13	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	c0002	1569	89	12	13	40	4	20	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	1/0	c0003	1569	61	3	11	45	1	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	c0004	1569	52	19	19	4	2	8	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	c0005	1569	13	0	1	10	2	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	c0006	1569	12	0	0	11	0	1	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	c0007	1569	3	0	0	0	0	3	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	c0008	1569	3	2	1	0	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	c0009	1569	2	0	1	1	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	c0010	1569	2	0	2	0	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	c0011	1569	2	2	0	0	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	c0012	1569	2	0	2	0	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	c0013	1569	1	0	0	0	0	1	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	c0014	1569	1	0	0	0	0	1	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	c0015	1569	1	0	0	0	0	1	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	c0016	1569	1	0	0	0	0	1	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	c0017	1569	1	0	0	1	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	c0018	1569	1	1	0	0	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	c0019	1569	1	0	0	1	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	c0020	1569	1	1	0	0	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	c0021	1569	1	0	0	1	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	c0022	1569	1	0	0	0	0	1	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	c0023	1569	1	0	0	1	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	c0024	1569	1	0	0	1	0	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN1_chr15_89659367_89684367	0/0	c0025	1569	1	0	0	0	1	0	copy fasta	PLIN1	chr15	89659367	89684367
PLIN2_chr9_19110761_19132492	1/0	c0001	1314	392	62	62	209	13	45	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/0	c0002	1314	36	21	6	6	2	1	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/1	c0003	1314	8	1	2	0	2	2	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/0	c0004	1314	3	2	1	0	0	0	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/0	c0005	1314	2	2	0	0	0	0	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/0	c0006	1314	1	0	1	0	0	0	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/0	c0007	1314	1	0	0	0	1	0	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/0	c0008	1314	1	1	0	0	0	0	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/0	c0009	1314	1	0	0	1	0	0	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/0	c0010	1314	1	0	0	1	0	0	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/0	c0011	1314	1	0	0	1	0	0	copy fasta	PLIN2	chr9	19110761	19132492
PLIN2_chr9_19110761_19132492	0/0	c0012	1314	1	1	0	0	0	0	copy fasta	PLIN2	chr9	19110761	19132492
PLIN3_chr19_4833341_4872667	0/0	c0001	1305	124	16	23	69	5	11	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	c0002	1305	116	16	14	74	5	7	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	c0003	1305	65	22	20	12	1	10	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	c0004	1305	52	10	5	27	0	10	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/1	c0005	1305	29	2	11	8	2	5	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	c0006	1305	16	4	3	8	0	1	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	c0007	1305	7	7	0	0	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	c0008	1305	5	0	3	0	1	1	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	c0009	1305	3	1	0	0	1	1	copy fasta	PLIN3	chr19	4833341	4872667