JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARID4B_chr1_235161902_235333179	0/0	c0004	3939	13	11	2	0	0	0	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	c0005	3936	7	5	1	1	0	0	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	c0006	3936	4	3	1	0	0	0	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	c0007	3939	2	0	2	0	0	0	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	c0008	3939	2	0	2	0	0	0	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	c0009	3939	2	2	0	0	0	0	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	c0010	3939	1	1	0	0	0	0	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	c0011	3939	1	1	0	0	0	0	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	c0012	3939	1	0	0	0	0	1	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	c0013	3939	1	0	0	0	0	1	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	c0014	3939	1	1	0	0	0	0	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	c0015	3936	1	0	0	0	0	1	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	c0016	3939	1	0	1	0	0	0	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	c0017	3939	1	0	1	0	0	0	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	c0018	3939	1	1	0	0	0	0	copy fasta	ARID4B	chr1	235161902	235333179
ARID4B_chr1_235161902_235333179	0/0	c0019	3939	1	0	1	0	0	0	copy fasta	ARID4B	chr1	235161902	235333179
ARID5A_chr2_96531752_96557634	1/1	c0001	1785	356	89	58	157	16	34	copy fasta	ARID5A	chr2	96531752	96557634
ARID5A_chr2_96531752_96557634	0/0	c0002	1785	7	0	3	4	0	0	copy fasta	ARID5A	chr2	96531752	96557634
ARID5A_chr2_96531752_96557634	0/0	c0003	1785	2	2	0	0	0	0	copy fasta	ARID5A	chr2	96531752	96557634
ARID5A_chr2_96531752_96557634	0/0	c0004	1785	1	1	0	0	0	0	copy fasta	ARID5A	chr2	96531752	96557634
ARID5A_chr2_96531752_96557634	0/0	c0005	1785	1	0	0	1	0	0	copy fasta	ARID5A	chr2	96531752	96557634
ARID5A_chr2_96531752_96557634	0/0	c0006	1785	1	0	0	1	0	0	copy fasta	ARID5A	chr2	96531752	96557634
ARID5A_chr2_96531752_96557634	0/0	c0007	1785	1	0	1	0	0	0	copy fasta	ARID5A	chr2	96531752	96557634
ARID5A_chr2_96531752_96557634	0/0	c0008	1785	1	0	1	0	0	0	copy fasta	ARID5A	chr2	96531752	96557634
ARID5A_chr2_96531752_96557634	0/0	c0009	1785	1	1	0	0	0	0	copy fasta	ARID5A	chr2	96531752	96557634
ARID5A_chr2_96531752_96557634	0/0	c0010	1785	1	0	0	1	0	0	copy fasta	ARID5A	chr2	96531752	96557634
ARID5A_chr2_96531752_96557634	0/0	c0011	1785	1	1	0	0	0	0	copy fasta	ARID5A	chr2	96531752	96557634
ARID5A_chr2_96531752_96557634	0/0	c0012	1785	1	0	1	0	0	0	copy fasta	ARID5A	chr2	96531752	96557634
ARID5B_chr10_61896699_62101944	0/0	c0001	3567	218	65	33	85	12	23	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	c0002	3567	9	1	3	0	2	3	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	c0003	3567	4	0	1	3	0	0	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	c0004	3567	3	2	1	0	0	0	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	c0005	3567	2	2	0	0	0	0	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	c0006	3567	2	2	0	0	0	0	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	c0007	3567	1	1	0	0	0	0	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	c0008	3567	1	1	0	0	0	0	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	c0009	3567	1	0	0	1	0	0	copy fasta	ARID5B	chr10	61896699	62101944
ARID5B_chr10_61896699_62101944	0/0	c0010	3567	1	0	0	1	0	0	copy fasta	ARID5B	chr10	61896699	62101944
ARIH1_chr15_72469330_72607987	1/1	c0001	1674	254	88	51	95	6	12	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	c0002	1677	5	1	3	0	1	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	c0003	1674	1	1	0	0	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	c0004	1674	1	0	0	0	1	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH1_chr15_72469330_72607987	0/0	c0005	1674	1	0	0	1	0	0	copy fasta	ARIH1	chr15	72469330	72607987
ARIH2_chr3_48913842_48991382	1/1	c0001	1482	200	80	40	46	14	18	copy fasta	ARIH2	chr3	48913842	48991382
ARIH2_chr3_48913842_48991382	0/0	c0002	1482	2	0	2	0	0	0	copy fasta	ARIH2	chr3	48913842	48991382
ARK2C_chr18_46329018_46468140	1/0	c0001	1041	252	79	48	83	8	33	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/1	c0002	1041	5	0	4	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	c0003	1041	1	0	0	0	0	1	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	c0004	1041	1	1	0	0	0	0	copy fasta	ARK2C	chr18	46329018	46468140
ARK2C_chr18_46329018_46468140	0/0	c0005	1041	1	0	0	1	0	0	copy fasta	ARK2C	chr18	46329018	46468140