JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLIN3_chr19_4833341_4872667	0/0	c0010	1305	3	3	0	0	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	c0011	1305	2	2	0	0	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	c0012	1305	2	0	2	0	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	c0013	1305	2	2	0	0	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	c0014	1305	2	2	0	0	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	c0015	1305	1	1	0	0	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	c0016	1305	1	1	0	0	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	c0017	1305	1	0	1	0	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	c0018	1305	1	0	0	1	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	c0019	1305	1	1	0	0	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	c0020	1305	1	0	0	0	0	1	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	c0021	1305	1	1	0	0	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	c0022	1305	1	1	0	0	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	c0023	1305	1	0	0	0	0	1	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	1/0	c0024	1305	1	0	0	0	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	c0025	1305	1	1	0	0	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	c0026	1305	1	1	0	0	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	c0027	1305	1	0	0	1	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	c0028	1305	1	1	0	0	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	c0029	1305	1	1	0	0	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	c0030	1305	1	0	0	1	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	c0031	1305	1	0	0	1	0	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN3_chr19_4833341_4872667	0/0	c0032	1305	1	0	0	0	1	0	copy fasta	PLIN3	chr19	4833341	4872667
PLIN4_chr19_4497192_4523486	0/1	c0001	4314	93	4	21	55	4	8	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0002	4314	21	1	3	13	2	2	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0003	4314	19	0	8	10	0	1	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0004	4215	12	0	0	12	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0005	4215	11	1	4	6	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0006	4314	11	0	6	0	1	4	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0007	4314	9	1	0	5	1	2	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0008	4017	6	6	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0009	4017	6	0	6	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0010	3621	5	5	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0011	4314	5	0	0	5	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0012	4116	5	0	1	3	0	1	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0013	4215	4	0	0	4	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0014	4314	4	0	1	1	0	2	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0015	3918	4	0	0	4	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0016	4314	4	0	0	4	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0017	4215	4	0	3	0	0	1	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0018	3819	3	3	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0019	4314	3	0	0	3	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0020	4314	3	0	0	3	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0021	4314	3	0	0	3	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0022	4314	3	0	0	3	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0023	4314	3	0	0	1	0	2	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0024	4314	3	0	0	0	0	3	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0025	4314	3	0	0	0	2	1	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0026	4215	3	3	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0027	3918	3	3	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486