JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLIN4_chr19_4497192_4523486	0/0	c0028	3621	2	2	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0029	4314	2	0	0	2	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0030	4215	2	2	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0031	4116	2	2	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0032	4314	2	2	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0033	4314	2	0	0	1	1	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0034	4315	2	0	1	0	0	1	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0035	3918	2	0	2	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0036	4314	2	0	1	1	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0037	4512	2	0	0	2	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0038	3720	2	2	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0039	4017	2	2	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0040	3720	2	0	1	0	0	1	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0041	3918	2	2	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0042	4215	2	0	0	0	2	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0043	3918	2	2	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0044	4314	2	0	0	0	0	2	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0045	4512	2	2	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0046	3720	2	2	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0047	3918	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0048	4017	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0049	4017	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0050	4413	1	0	1	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0051	4314	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0052	4116	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0053	3918	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0054	3720	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0055	3226	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0056	3819	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0057	3621	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0058	3423	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0059	3621	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0060	4017	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0061	4018	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0062	4017	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0063	3819	1	0	0	0	0	1	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0064	3819	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0065	3621	1	0	0	0	0	1	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0066	3225	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0067	4018	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0068	4017	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0069	4413	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0070	3621	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0071	4017	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0072	3621	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0073	3621	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0074	3621	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0075	4314	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0076	4314	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0077	4215	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486