JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLIN4_chr19_4497192_4523486	0/0	c0128	4314	1	0	1	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0129	4314	1	0	1	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0130	4314	1	0	0	0	0	1	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0131	4314	1	0	0	0	0	1	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0132	4413	1	0	0	1	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0133	4314	1	0	0	1	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0134	4314	1	0	0	0	0	1	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0135	3918	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0136	4017	1	0	1	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0137	4017	1	0	1	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0138	3720	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0139	3720	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0140	3918	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0141	3918	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0142	3918	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0143	4017	1	0	1	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0144	3918	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0145	4017	1	0	0	0	1	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0146	4116	1	0	0	1	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0147	4314	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0148	4215	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0149	3720	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0150	3918	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0151	3918	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0152	4314	1	0	1	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0153	4314	1	0	0	1	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0154	4314	1	0	1	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0155	4314	1	0	1	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0156	4314	1	0	1	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0157	4314	1	0	1	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	1/0	c0158	4116	1	0	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0159	4314	1	0	0	0	0	1	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0160	4314	1	0	1	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0161	4314	1	0	0	0	0	1	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0162	3918	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0163	4215	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0164	4215	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0165	4216	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0166	4116	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN4_chr19_4497192_4523486	0/0	c0167	4017	1	1	0	0	0	0	copy fasta	PLIN4	chr19	4497192	4523486
PLIN5_chr19_4517531_4540224	0/1	c0001	1392	267	75	46	104	13	28	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	1/0	c0002	1392	73	2	9	51	0	10	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	c0003	1392	27	0	16	4	3	4	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	c0004	1392	8	0	8	0	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	c0005	1392	7	7	0	0	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	c0006	1392	5	0	0	2	0	3	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	c0007	1392	4	4	0	0	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	c0008	1392	2	2	0	0	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	c0009	1392	2	2	0	0	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	c0010	1392	2	0	0	2	0	0	copy fasta	PLIN5	chr19	4517531	4540224