JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLIN5_chr19_4517531_4540224	0/0	c0011	1392	1	1	0	0	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	c0012	1392	1	0	0	1	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	c0013	1392	1	0	1	0	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	c0014	1392	1	1	0	0	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	c0015	1392	1	1	0	0	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	c0016	1392	1	0	1	0	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	c0017	1392	1	1	0	0	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	c0018	1392	1	0	0	1	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	c0019	1392	1	0	1	0	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	c0020	1392	1	0	0	0	0	1	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	c0021	1392	1	1	0	0	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	c0022	1392	1	0	0	1	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	c0023	1392	1	0	0	0	0	1	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	c0024	1392	1	1	0	0	0	0	copy fasta	PLIN5	chr19	4517531	4540224
PLIN5_chr19_4517531_4540224	0/0	c0025	1392	1	0	0	0	0	1	copy fasta	PLIN5	chr19	4517531	4540224
PLK1_chr16_23673889_23695367	1/1	c0001	1812	324	62	60	155	9	36	copy fasta	PLK1	chr16	23673889	23695367
PLK1_chr16_23673889_23695367	0/0	c0002	1812	10	10	0	0	0	0	copy fasta	PLK1	chr16	23673889	23695367
PLK1_chr16_23673889_23695367	0/0	c0003	1812	6	6	0	0	0	0	copy fasta	PLK1	chr16	23673889	23695367
PLK1_chr16_23673889_23695367	0/0	c0004	1812	4	0	0	4	0	0	copy fasta	PLK1	chr16	23673889	23695367
PLK1_chr16_23673889_23695367	0/0	c0005	1812	2	0	1	0	1	0	copy fasta	PLK1	chr16	23673889	23695367
PLK1_chr16_23673889_23695367	0/0	c0006	1812	1	1	0	0	0	0	copy fasta	PLK1	chr16	23673889	23695367
PLK1_chr16_23673889_23695367	0/0	c0007	1812	1	0	0	1	0	0	copy fasta	PLK1	chr16	23673889	23695367
PLK1_chr16_23673889_23695367	0/0	c0008	1812	1	1	0	0	0	0	copy fasta	PLK1	chr16	23673889	23695367
PLK1_chr16_23673889_23695367	0/0	c0009	1812	1	0	1	0	0	0	copy fasta	PLK1	chr16	23673889	23695367
PLK1_chr16_23673889_23695367	0/0	c0010	1812	1	0	1	0	0	0	copy fasta	PLK1	chr16	23673889	23695367
PLK1_chr16_23673889_23695367	0/0	c0011	1812	1	1	0	0	0	0	copy fasta	PLK1	chr16	23673889	23695367
PLK1_chr16_23673889_23695367	0/0	c0012	1812	1	1	0	0	0	0	copy fasta	PLK1	chr16	23673889	23695367
PLK1_chr16_23673889_23695367	0/0	c0013	1812	1	0	1	0	0	0	copy fasta	PLK1	chr16	23673889	23695367
PLK2_chr5_58448982_58465086	0/0	c0001	2058	155	25	35	79	4	12	copy fasta	PLK2	chr5	58448982	58465086
PLK2_chr5_58448982_58465086	1/0	c0002	2058	113	23	19	35	7	28	copy fasta	PLK2	chr5	58448982	58465086
PLK2_chr5_58448982_58465086	0/1	c0003	2058	75	17	8	39	6	4	copy fasta	PLK2	chr5	58448982	58465086
PLK2_chr5_58448982_58465086	0/0	c0004	2058	29	14	11	0	1	3	copy fasta	PLK2	chr5	58448982	58465086
PLK2_chr5_58448982_58465086	0/0	c0005	2058	9	7	2	0	0	0	copy fasta	PLK2	chr5	58448982	58465086
PLK2_chr5_58448982_58465086	0/0	c0006	2058	2	1	1	0	0	0	copy fasta	PLK2	chr5	58448982	58465086
PLK2_chr5_58448982_58465086	0/0	c0007	2058	1	0	0	1	0	0	copy fasta	PLK2	chr5	58448982	58465086
PLK2_chr5_58448982_58465086	0/0	c0008	2058	1	0	0	1	0	0	copy fasta	PLK2	chr5	58448982	58465086
PLK2_chr5_58448982_58465086	0/0	c0009	2058	1	0	0	1	0	0	copy fasta	PLK2	chr5	58448982	58465086
PLK2_chr5_58448982_58465086	0/0	c0010	2058	1	0	0	1	0	0	copy fasta	PLK2	chr5	58448982	58465086
PLK2_chr5_58448982_58465086	0/0	c0011	2058	1	0	0	0	0	1	copy fasta	PLK2	chr5	58448982	58465086
PLK2_chr5_58448982_58465086	0/0	c0012	2058	1	0	0	1	0	0	copy fasta	PLK2	chr5	58448982	58465086
PLK2_chr5_58448982_58465086	0/0	c0013	2058	1	1	0	0	0	0	copy fasta	PLK2	chr5	58448982	58465086
PLK3_chr1_44795377_44810990	1/0	c0001	1941	274	72	39	119	10	33	copy fasta	PLK3	chr1	44795377	44810990
PLK3_chr1_44795377_44810990	0/1	c0002	1941	81	10	13	45	4	8	copy fasta	PLK3	chr1	44795377	44810990
PLK3_chr1_44795377_44810990	0/0	c0003	1941	13	0	7	0	2	4	copy fasta	PLK3	chr1	44795377	44810990
PLK3_chr1_44795377_44810990	0/0	c0004	1941	4	0	0	4	0	0	copy fasta	PLK3	chr1	44795377	44810990
PLK3_chr1_44795377_44810990	0/0	c0005	1941	2	2	0	0	0	0	copy fasta	PLK3	chr1	44795377	44810990
PLK3_chr1_44795377_44810990	0/0	c0006	1941	1	0	1	0	0	0	copy fasta	PLK3	chr1	44795377	44810990
PLK3_chr1_44795377_44810990	0/0	c0007	1941	1	0	0	1	0	0	copy fasta	PLK3	chr1	44795377	44810990
PLK3_chr1_44795377_44810990	0/0	c0008	1941	1	0	0	0	0	1	copy fasta	PLK3	chr1	44795377	44810990
PLK3_chr1_44795377_44810990	0/0	c0009	1941	1	0	0	0	0	1	copy fasta	PLK3	chr1	44795377	44810990