JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLK3_chr1_44795377_44810990	0/0	c0010	1941	1	1	0	0	0	0	copy fasta	PLK3	chr1	44795377	44810990
PLK3_chr1_44795377_44810990	0/0	c0011	1941	1	0	0	0	0	1	copy fasta	PLK3	chr1	44795377	44810990
PLK3_chr1_44795377_44810990	0/0	c0012	1941	1	1	0	0	0	0	copy fasta	PLK3	chr1	44795377	44810990
PLK3_chr1_44795377_44810990	0/0	c0013	1941	1	0	0	1	0	0	copy fasta	PLK3	chr1	44795377	44810990
PLK3_chr1_44795377_44810990	0/0	c0014	1941	1	0	1	0	0	0	copy fasta	PLK3	chr1	44795377	44810990
PLK3_chr1_44795377_44810990	0/0	c0015	1941	1	0	1	0	0	0	copy fasta	PLK3	chr1	44795377	44810990
PLK4_chr4_127875893_127904224	0/1	c0001	2913	168	60	29	56	8	14	copy fasta	PLK4	chr4	127875893	127904224
PLK4_chr4_127875893_127904224	1/0	c0002	2913	106	16	17	58	5	9	copy fasta	PLK4	chr4	127875893	127904224
PLK4_chr4_127875893_127904224	0/0	c0003	2913	69	0	7	62	0	0	copy fasta	PLK4	chr4	127875893	127904224
PLK4_chr4_127875893_127904224	0/0	c0004	2913	4	4	0	0	0	0	copy fasta	PLK4	chr4	127875893	127904224
PLK4_chr4_127875893_127904224	0/0	c0005	2913	3	3	0	0	0	0	copy fasta	PLK4	chr4	127875893	127904224
PLK4_chr4_127875893_127904224	0/0	c0006	2913	3	3	0	0	0	0	copy fasta	PLK4	chr4	127875893	127904224
PLK4_chr4_127875893_127904224	0/0	c0007	2913	2	0	1	0	0	1	copy fasta	PLK4	chr4	127875893	127904224
PLK4_chr4_127875893_127904224	0/0	c0008	2913	2	0	1	0	1	0	copy fasta	PLK4	chr4	127875893	127904224
PLK4_chr4_127875893_127904224	0/0	c0009	2913	1	1	0	0	0	0	copy fasta	PLK4	chr4	127875893	127904224
PLK4_chr4_127875893_127904224	0/0	c0010	2913	1	0	1	0	0	0	copy fasta	PLK4	chr4	127875893	127904224
PLK4_chr4_127875893_127904224	0/0	c0011	2913	1	0	0	1	0	0	copy fasta	PLK4	chr4	127875893	127904224
PLK4_chr4_127875893_127904224	0/0	c0012	2913	1	0	0	1	0	0	copy fasta	PLK4	chr4	127875893	127904224
PLK4_chr4_127875893_127904224	0/0	c0013	2913	1	1	0	0	0	0	copy fasta	PLK4	chr4	127875893	127904224
PLK4_chr4_127875893_127904224	0/0	c0014	2913	1	0	0	1	0	0	copy fasta	PLK4	chr4	127875893	127904224
PLK4_chr4_127875893_127904224	0/0	c0015	2913	1	0	0	1	0	0	copy fasta	PLK4	chr4	127875893	127904224
PLK5_chr19_1519077_1541046	0/0	c0001	1008	199	31	22	126	3	17	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	1/0	c0002	1011	90	15	15	32	10	17	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/1	c0003	1011	85	10	32	28	2	12	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	c0004	1008	15	15	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	c0005	1011	10	10	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	c0006	1011	7	5	2	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	c0007	1008	4	4	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	c0008	1011	3	3	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	c0009	1008	3	0	3	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	c0010	1008	2	0	0	2	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	c0011	1008	2	2	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	c0012	1011	2	0	1	0	0	1	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	c0013	1011	1	0	0	1	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	c0014	1011	1	0	0	0	1	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	c0015	1011	1	0	0	1	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	c0016	1008	1	0	0	1	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	c0017	1008	1	1	0	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	c0018	1008	1	0	0	0	0	1	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	c0019	1011	1	0	1	0	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLK5_chr19_1519077_1541046	0/0	c0020	1008	1	0	0	1	0	0	copy fasta	PLK5	chr19	1519077	1541046
PLLP_chr16_57251097_57289672	1/1	c0001	549	359	81	72	144	16	44	copy fasta	PLLP	chr16	57251097	57289672
PLLP_chr16_57251097_57289672	0/0	c0002	549	5	5	0	0	0	0	copy fasta	PLLP	chr16	57251097	57289672
PLLP_chr16_57251097_57289672	0/0	c0003	549	4	3	1	0	0	0	copy fasta	PLLP	chr16	57251097	57289672
PLLP_chr16_57251097_57289672	0/0	c0004	549	1	0	1	0	0	0	copy fasta	PLLP	chr16	57251097	57289672
PLLP_chr16_57251097_57289672	0/0	c0005	549	1	1	0	0	0	0	copy fasta	PLLP	chr16	57251097	57289672
PLN_chr6_118543296_118566716	1/1	c0001	159	384	94	74	154	18	42	copy fasta	PLN	chr6	118543296	118566716
PLOD1_chr1_11929717_11980537	1/1	c0001	2184	131	26	30	58	4	11	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0002	2184	80	1	18	46	3	12	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0003	2184	52	8	6	31	3	4	copy fasta	PLOD1	chr1	11929717	11980537