JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLOD1_chr1_11929717_11980537	0/0	c0004	2184	21	0	3	13	0	5	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0005	2184	15	14	1	0	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0006	2184	11	6	1	2	0	2	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0007	2184	10	9	0	1	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0008	2184	9	1	0	7	0	1	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0009	2184	6	5	1	0	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0010	2184	6	3	0	2	0	1	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0011	2184	4	4	0	0	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0012	2184	4	4	0	0	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0013	2184	4	1	0	3	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0014	2184	3	3	0	0	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0015	2184	3	2	1	0	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0016	2184	3	3	0	0	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0017	2184	2	0	0	2	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0018	2184	1	1	0	0	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0019	2184	1	1	0	0	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0020	2184	1	1	0	0	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0021	2184	1	0	0	0	0	1	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0022	2184	1	1	0	0	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0023	2184	1	0	1	0	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0024	2184	1	0	0	0	0	1	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0025	2184	1	0	0	1	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0026	2184	1	0	1	0	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0027	2184	1	1	0	0	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0028	2184	1	1	0	0	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0029	2184	1	0	1	0	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0030	2184	1	0	0	1	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0031	2184	1	0	0	1	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0032	2184	1	1	0	0	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD1_chr1_11929717_11980537	0/0	c0033	2184	1	1	0	0	0	0	copy fasta	PLOD1	chr1	11929717	11980537
PLOD2_chr3_146064440_146166184	1/1	c0001	2277	350	84	65	156	11	32	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	c0002	2277	4	3	1	0	0	0	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	c0003	2277	2	2	0	0	0	0	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	c0004	2277	2	0	0	2	0	0	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	c0005	2277	1	1	0	0	0	0	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	c0006	2277	1	1	0	0	0	0	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	c0007	2277	1	1	0	0	0	0	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	c0008	2277	1	0	0	1	0	0	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	c0009	2277	1	1	0	0	0	0	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	c0010	2277	1	0	0	1	0	0	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	c0011	2277	1	1	0	0	0	0	copy fasta	PLOD2	chr3	146064440	146166184
PLOD2_chr3_146064440_146166184	0/0	c0012	2277	1	0	0	0	1	0	copy fasta	PLOD2	chr3	146064440	146166184
PLOD3_chr7_101200984_101222581	1/1	c0001	2217	336	87	59	127	16	45	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	c0002	2217	26	0	0	26	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	c0003	2217	21	3	2	16	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	c0004	2217	5	0	0	5	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	c0005	2217	4	0	0	4	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	c0006	2217	4	0	0	4	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	c0007	2217	4	1	2	0	1	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	c0008	2217	3	0	0	3	0	0	copy fasta	PLOD3	chr7	101200984	101222581