JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLOD3_chr7_101200984_101222581	0/0	c0009	2217	3	0	0	3	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	c0010	2217	2	1	1	0	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	c0011	2217	2	0	0	0	0	2	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	c0012	2217	2	0	1	0	1	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	c0013	2217	1	0	1	0	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	c0014	2217	1	0	0	0	0	1	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	c0015	2217	1	0	0	1	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	c0016	2217	1	1	0	0	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	c0017	2217	1	1	0	0	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	c0018	2217	1	0	0	1	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	c0019	2217	1	0	0	0	0	1	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	c0020	2217	1	0	0	0	0	1	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	c0021	2217	1	0	0	1	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	c0022	2217	1	0	0	1	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	c0023	2217	1	0	0	1	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	c0024	2217	1	1	0	0	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	c0025	2217	1	1	0	0	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	c0026	2217	1	0	0	1	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	c0027	2217	1	1	0	0	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLOD3_chr7_101200984_101222581	0/0	c0028	2217	1	1	0	0	0	0	copy fasta	PLOD3	chr7	101200984	101222581
PLP1_chrX_103771840_103797619	1/1	c0001	834	236	69	43	96	6	20	copy fasta	PLP1	chrX	103771840	103797619
PLP1_chrX_103771840_103797619	0/0	c0002	834	73	9	13	38	3	10	copy fasta	PLP1	chrX	103771840	103797619
PLP1_chrX_103771840_103797619	0/0	c0003	834	7	0	2	5	0	0	copy fasta	PLP1	chrX	103771840	103797619
PLP1_chrX_103771840_103797619	0/0	c0004	834	1	0	0	1	0	0	copy fasta	PLP1	chrX	103771840	103797619
PLP2_chrX_49166898_49180235	1/1	c0001	459	258	71	53	91	11	30	copy fasta	PLP2	chrX	49166898	49180235
PLP2_chrX_49166898_49180235	0/0	c0002	460	1	0	0	1	0	0	copy fasta	PLP2	chrX	49166898	49180235
PLP2_chrX_49166898_49180235	0/0	c0003	459	1	1	0	0	0	0	copy fasta	PLP2	chrX	49166898	49180235
PLPBP_chr8_37757645_37784768	1/1	c0001	828	337	82	63	140	12	38	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	c0002	828	4	3	1	0	0	0	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	c0003	828	2	0	0	0	0	2	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	c0004	828	1	1	0	0	0	0	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	c0005	828	1	1	0	0	0	0	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	c0006	828	1	0	0	1	0	0	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	c0007	828	1	0	0	1	0	0	copy fasta	PLPBP	chr8	37757645	37784768
PLPBP_chr8_37757645_37784768	0/0	c0008	828	1	1	0	0	0	0	copy fasta	PLPBP	chr8	37757645	37784768
PLPP1_chr5_55419854_55539964	1/1	c0001	855	288	75	44	130	8	29	copy fasta	PLPP1	chr5	55419854	55539964
PLPP1_chr5_55419854_55539964	0/0	c0002	855	3	0	3	0	0	0	copy fasta	PLPP1	chr5	55419854	55539964
PLPP1_chr5_55419854_55539964	0/0	c0003	855	1	1	0	0	0	0	copy fasta	PLPP1	chr5	55419854	55539964
PLPP1_chr5_55419854_55539964	0/0	c0004	855	1	0	0	0	0	1	copy fasta	PLPP1	chr5	55419854	55539964
PLPP1_chr5_55419854_55539964	0/0	c0005	855	1	0	1	0	0	0	copy fasta	PLPP1	chr5	55419854	55539964
PLPP2_chr19_276043_296403	1/1	c0001	867	230	52	36	103	8	29	copy fasta	PLPP2	chr19	276043	296403
PLPP2_chr19_276043_296403	0/0	c0002	867	109	29	34	31	5	10	copy fasta	PLPP2	chr19	276043	296403
PLPP2_chr19_276043_296403	0/0	c0003	867	8	8	0	0	0	0	copy fasta	PLPP2	chr19	276043	296403
PLPP2_chr19_276043_296403	0/0	c0004	867	5	1	2	0	1	1	copy fasta	PLPP2	chr19	276043	296403
PLPP2_chr19_276043_296403	0/0	c0005	867	1	1	0	0	0	0	copy fasta	PLPP2	chr19	276043	296403
PLPP2_chr19_276043_296403	0/0	c0006	867	1	1	0	0	0	0	copy fasta	PLPP2	chr19	276043	296403
PLPP3_chr1_56489761_56584563	1/1	c0001	936	252	75	49	85	12	29	copy fasta	PLPP3	chr1	56489761	56584563
PLPP3_chr1_56489761_56584563	0/0	c0002	936	58	22	0	34	0	2	copy fasta	PLPP3	chr1	56489761	56584563
PLPP3_chr1_56489761_56584563	0/0	c0003	936	24	0	9	9	1	5	copy fasta	PLPP3	chr1	56489761	56584563
PLPP3_chr1_56489761_56584563	0/0	c0004	936	1	0	0	0	1	0	copy fasta	PLPP3	chr1	56489761	56584563