JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLPP3_chr1_56489761_56584563	0/0	c0005	936	1	1	0	0	0	0	copy fasta	PLPP3	chr1	56489761	56584563
PLPP4_chr10_120452227_120597065	1/1	c0001	816	211	53	30	105	6	15	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	c0002	816	48	9	4	31	2	2	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	c0003	816	47	18	12	8	3	6	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	c0004	816	13	1	6	3	1	2	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	c0005	816	3	3	0	0	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	c0006	816	2	2	0	0	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	c0007	816	1	1	0	0	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	c0008	816	1	1	0	0	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	c0009	816	1	0	0	1	0	0	copy fasta	PLPP4	chr10	120452227	120597065
PLPP4_chr10_120452227_120597065	0/0	c0010	816	1	0	0	0	0	1	copy fasta	PLPP4	chr10	120452227	120597065
PLPP5_chr8_38258130_38274224	1/1	c0001	795	317	68	63	142	14	28	copy fasta	PLPP5	chr8	38258130	38274224
PLPP5_chr8_38258130_38274224	0/0	c0002	795	3	0	0	3	0	0	copy fasta	PLPP5	chr8	38258130	38274224
PLPP5_chr8_38258130_38274224	0/0	c0003	795	2	2	0	0	0	0	copy fasta	PLPP5	chr8	38258130	38274224
PLPP5_chr8_38258130_38274224	0/0	c0004	795	1	0	1	0	0	0	copy fasta	PLPP5	chr8	38258130	38274224
PLPP5_chr8_38258130_38274224	0/0	c0005	795	1	0	0	1	0	0	copy fasta	PLPP5	chr8	38258130	38274224
PLPP6_chr9_4657294_4670258	1/1	c0001	888	426	89	79	203	13	40	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	c0002	888	45	5	8	21	3	8	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	c0003	888	4	0	0	4	0	0	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	c0004	888	2	2	0	0	0	0	copy fasta	PLPP6	chr9	4657294	4670258
PLPP6_chr9_4657294_4670258	0/0	c0005	888	1	0	1	0	0	0	copy fasta	PLPP6	chr9	4657294	4670258
PLPP7_chr9_131284723_131314261	0/1	c0001	816	291	37	54	151	14	34	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	1/0	c0002	816	141	57	16	51	3	13	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	0/0	c0003	816	4	3	1	0	0	0	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	0/0	c0004	816	2	0	2	0	0	0	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	0/0	c0005	816	1	0	1	0	0	0	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	0/0	c0006	816	1	1	0	0	0	0	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	0/0	c0007	826	1	0	0	1	0	0	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	0/0	c0008	816	1	0	0	0	1	0	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	0/0	c0009	816	1	0	0	1	0	0	copy fasta	PLPP7	chr9	131284723	131314261
PLPP7_chr9_131284723_131314261	0/0	c0010	816	1	0	0	0	0	1	copy fasta	PLPP7	chr9	131284723	131314261
PLPPR1_chr9_101023727_101330135	0/1	c0001	978	180	65	32	54	8	20	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	c0002	978	16	15	1	0	0	0	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	c0003	978	4	0	1	0	2	1	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	c0004	978	1	0	0	0	0	1	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	c0005	978	1	1	0	0	0	0	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR1_chr9_101023727_101330135	0/0	c0006	978	1	1	0	0	0	0	copy fasta	PLPPR1	chr9	101023727	101330135
PLPPR2_chr19_11350432_11370698	1/1	c0001	1359	352	80	67	162	13	28	copy fasta	PLPPR2	chr19	11350432	11370698
PLPPR2_chr19_11350432_11370698	0/0	c0002	1359	23	0	5	5	3	10	copy fasta	PLPPR2	chr19	11350432	11370698
PLPPR2_chr19_11350432_11370698	0/0	c0003	1359	8	7	1	0	0	0	copy fasta	PLPPR2	chr19	11350432	11370698
PLPPR2_chr19_11350432_11370698	0/0	c0004	1359	3	0	0	0	0	3	copy fasta	PLPPR2	chr19	11350432	11370698
PLPPR2_chr19_11350432_11370698	0/0	c0005	1359	2	0	0	2	0	0	copy fasta	PLPPR2	chr19	11350432	11370698
PLPPR2_chr19_11350432_11370698	0/0	c0006	1359	1	1	0	0	0	0	copy fasta	PLPPR2	chr19	11350432	11370698
PLPPR2_chr19_11350432_11370698	0/0	c0007	1359	1	0	0	1	0	0	copy fasta	PLPPR2	chr19	11350432	11370698
PLPPR2_chr19_11350432_11370698	0/0	c0008	1359	1	1	0	0	0	0	copy fasta	PLPPR2	chr19	11350432	11370698
PLPPR2_chr19_11350432_11370698	0/0	c0009	1359	1	1	0	0	0	0	copy fasta	PLPPR2	chr19	11350432	11370698
PLPPR2_chr19_11350432_11370698	0/0	c0010	1359	1	0	0	0	0	1	copy fasta	PLPPR2	chr19	11350432	11370698
PLPPR2_chr19_11350432_11370698	0/0	c0011	1359	1	0	1	0	0	0	copy fasta	PLPPR2	chr19	11350432	11370698
PLPPR3_chr19_807488_826955	1/0	c0001	2157	207	23	42	105	11	25	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/1	c0002	2157	35	1	5	20	4	4	copy fasta	PLPPR3	chr19	807488	826955