JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLPPR3_chr19_807488_826955	0/0	c0003	2157	28	19	2	2	2	3	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0004	2157	26	25	1	0	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0005	2157	12	0	7	3	0	2	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0006	2157	12	11	1	0	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0007	2158	12	0	2	8	0	2	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0008	2157	9	2	2	2	0	3	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0009	2158	7	0	2	5	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0010	2157	7	0	0	7	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0011	2157	5	4	1	0	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0012	2157	4	0	3	1	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0013	2157	3	0	3	0	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0014	2157	2	0	0	0	1	1	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0015	2157	2	2	0	0	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0016	2157	2	0	0	0	0	2	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0017	2157	1	0	0	1	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0018	2157	1	0	0	1	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0019	2158	1	0	0	0	0	1	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0020	2158	1	0	0	0	0	1	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0021	2157	1	0	0	0	0	1	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0022	2157	1	0	0	0	0	1	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0023	2157	1	1	0	0	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0024	2157	1	1	0	0	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0025	2157	1	0	0	1	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0026	2157	1	0	0	0	0	1	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0027	2158	1	0	0	1	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0028	2158	1	0	1	0	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0029	2157	1	1	0	0	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0030	2157	1	0	0	1	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0031	2157	1	0	0	1	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0032	2157	1	1	0	0	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0033	2158	1	1	0	0	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0034	2157	1	1	0	0	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0035	2157	1	1	0	0	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0036	2157	1	0	0	1	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0037	2158	1	0	0	1	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0038	2157	1	0	0	1	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0039	2157	1	0	0	1	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0040	2157	1	0	0	0	0	1	copy fasta	PLPPR3	chr19	807488	826955
PLPPR3_chr19_807488_826955	0/0	c0041	2158	1	0	0	1	0	0	copy fasta	PLPPR3	chr19	807488	826955
PLPPR4_chr1_99259492_99314584	1/0	c0001	2148	333	85	66	136	10	35	copy fasta	PLPPR4	chr1	99259492	99314584
PLPPR4_chr1_99259492_99314584	0/1	c0002	2148	45	2	8	29	0	5	copy fasta	PLPPR4	chr1	99259492	99314584
PLPPR4_chr1_99259492_99314584	0/0	c0003	2148	3	3	0	0	0	0	copy fasta	PLPPR4	chr1	99259492	99314584
PLPPR4_chr1_99259492_99314584	0/0	c0004	2148	1	1	0	0	0	0	copy fasta	PLPPR4	chr1	99259492	99314584
PLPPR4_chr1_99259492_99314584	0/0	c0005	2148	1	1	0	0	0	0	copy fasta	PLPPR4	chr1	99259492	99314584
PLPPR4_chr1_99259492_99314584	0/0	c0006	2148	1	0	0	1	0	0	copy fasta	PLPPR4	chr1	99259492	99314584
PLPPR5_chr1_98885245_99009861	1/0	c0001	966	210	61	43	71	6	28	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	c0002	966	55	14	7	27	2	5	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	c0003	966	6	6	0	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/1	c0004	966	2	0	1	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	c0005	966	1	0	0	0	0	1	copy fasta	PLPPR5	chr1	98885245	99009861