Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
A4GNT_chr3_138118713_138137390	0/0	c0001	1023	188	45	45	72	7	19	copy fasta	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	1/1	c0002	1023	140	21	16	81	4	16	copy fasta	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	c0003	1023	48	14	3	25	0	6	copy fasta	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	c0004	1023	7	6	0	0	0	1	copy fasta	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	c0005	1023	4	4	0	0	0	0	copy fasta	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	c0006	1023	3	2	1	0	0	0	copy fasta	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	c0007	1023	2	0	1	0	1	0	copy fasta	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	c0008	1023	2	2	0	0	0	0	copy fasta	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	c0009	1023	1	1	0	0	0	0	copy fasta	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	c0010	1023	1	0	0	1	0	0	copy fasta	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	c0011	1023	1	1	0	0	0	0	copy fasta	A4GNT	chr3	138118713	138137390
A4GNT_chr3_138118713_138137390	0/0	c0012	1023	1	0	0	1	0	0	copy fasta	A4GNT	chr3	138118713	138137390
AAAS_chr12_53302460_53326610	0/1	c0001	1641	280	67	56	112	8	36	copy fasta	AAAS	chr12	53302460	53326610
AAAS_chr12_53302460_53326610	1/0	c0002	1641	17	14	2	0	0	0	copy fasta	AAAS	chr12	53302460	53326610
AAAS_chr12_53302460_53326610	0/0	c0003	1641	11	2	7	0	2	0	copy fasta	AAAS	chr12	53302460	53326610
AAAS_chr12_53302460_53326610	0/0	c0004	1641	6	4	2	0	0	0	copy fasta	AAAS	chr12	53302460	53326610
AAAS_chr12_53302460_53326610	0/0	c0005	1641	5	5	0	0	0	0	copy fasta	AAAS	chr12	53302460	53326610
AAAS_chr12_53302460_53326610	0/0	c0006	1641	4	0	0	4	0	0	copy fasta	AAAS	chr12	53302460	53326610
AAAS_chr12_53302460_53326610	0/0	c0007	1641	2	0	0	0	0	2	copy fasta	AAAS	chr12	53302460	53326610
AAAS_chr12_53302460_53326610	0/0	c0008	1641	2	0	0	2	0	0	copy fasta	AAAS	chr12	53302460	53326610
AAAS_chr12_53302460_53326610	0/0	c0009	1641	2	0	0	2	0	0	copy fasta	AAAS	chr12	53302460	53326610
AAAS_chr12_53302460_53326610	0/0	c0010	1641	1	0	1	0	0	0	copy fasta	AAAS	chr12	53302460	53326610
AACS_chr12_125060435_125148316	1/0	c0001	2019	226	45	58	84	12	26	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/1	c0002	2019	63	19	9	19	2	13	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	c0003	2019	23	4	0	17	0	2	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	c0004	2019	16	2	0	14	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	c0005	2019	8	8	0	0	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	c0006	2019	4	0	0	4	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	c0007	2019	3	3	0	0	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	c0008	2019	2	0	0	2	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	c0009	2019	2	2	0	0	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	c0010	2019	1	1	0	0	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	c0011	2019	1	1	0	0	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	c0012	2019	1	0	0	1	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	c0013	2019	1	1	0	0	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	c0014	2019	1	0	1	0	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	c0015	2019	1	1	0	0	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	c0016	2019	1	1	0	0	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	c0017	2019	1	0	0	1	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	c0018	2019	1	0	0	1	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	c0019	2019	1	0	0	0	0	1	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	c0020	2019	1	0	0	1	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	c0021	2019	1	1	0	0	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	c0022	2019	1	0	1	0	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	c0023	2019	1	0	0	1	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	c0024	2019	1	1	0	0	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	c0025	2019	1	0	1	0	0	0	copy fasta	AACS	chr12	125060435	125148316
AACS_chr12_125060435_125148316	0/0	c0026	2019	1	0	0	1	0	0	copy fasta	AACS	chr12	125060435	125148316
AADACL2_chr3_151728927_151766339	0/1	c0001	1206	275	68	53	115	12	26	copy fasta	AADACL2	chr3	151728927	151766339
AADACL2_chr3_151728927_151766339	1/0	c0002	1206	141	17	26	79	6	12	copy fasta	AADACL2	chr3	151728927	151766339