Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABCC6_chr16_16144565_16228494	0/0	c0074	4512	1	1	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	c0075	4512	1	0	1	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	c0076	4512	1	0	1	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	c0077	4512	1	1	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	c0078	4512	1	1	0	0	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	c0079	4512	1	0	0	1	0	0	copy fasta	ABCC6	chr16	16144565	16228494
ABCC6_chr16_16144565_16228494	0/0	c0080	4512	1	0	0	0	0	1	copy fasta	ABCC6	chr16	16144565	16228494
ABCC8_chr11_17387885_17481845	0/0	c0001	4746	36	1	2	27	1	5	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	1/0	c0002	4746	24	0	3	18	1	1	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0003	4746	23	3	7	8	1	4	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0004	4746	18	5	5	4	2	2	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0005	4746	15	0	2	8	1	4	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0006	4746	13	5	4	4	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0007	4746	12	0	1	9	1	1	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0008	4746	11	3	4	0	0	4	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0009	4746	11	6	1	1	1	2	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0010	4746	11	4	6	0	1	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0011	4746	10	0	1	6	0	3	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0012	4746	9	0	0	3	3	3	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0013	4746	9	0	2	6	0	1	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0014	4746	8	6	2	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0015	4746	8	8	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0016	4746	6	0	2	1	0	3	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0017	4746	6	6	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0018	4746	6	1	1	4	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0019	4746	5	0	5	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0020	4746	5	1	3	0	0	1	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0021	4746	4	2	0	2	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0022	4746	4	4	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0023	4746	3	0	1	2	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0024	4746	3	0	0	3	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0025	4746	3	3	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0026	4746	3	3	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0027	4746	3	0	1	0	0	2	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0028	4746	2	0	0	1	1	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0029	4746	2	1	0	0	0	1	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0030	4746	2	0	0	0	1	1	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0031	4746	2	0	2	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0032	4746	2	0	1	0	0	1	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0033	4746	2	0	1	0	0	1	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0034	4746	2	2	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0035	4746	1	1	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0036	4746	1	1	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0037	4746	1	0	0	1	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0038	4746	1	0	0	1	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0039	4746	1	0	0	1	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0040	4746	1	0	0	1	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0041	4746	1	0	0	1	0	0	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0042	4746	1	0	0	0	0	1	copy fasta	ABCC8	chr11	17387885	17481845
ABCC8_chr11_17387885_17481845	0/0	c0043	4746	1	1	0	0	0	0	copy fasta	ABCC8	chr11	17387885	17481845