JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARK2N_chr18_46169034_46271992	1/0	c0001	1215	207	60	45	74	8	19	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/1	c0002	1212	107	22	12	54	3	15	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	c0003	1215	3	3	0	0	0	0	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	c0004	1215	1	0	0	0	1	0	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	c0005	1215	1	0	1	0	0	0	copy fasta	ARK2N	chr18	46169034	46271992
ARK2N_chr18_46169034_46271992	0/0	c0006	1215	1	1	0	0	0	0	copy fasta	ARK2N	chr18	46169034	46271992
ARL10_chr5_176360487_176386909	0/1	c0001	735	208	51	40	85	9	22	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	1/0	c0002	735	148	37	27	64	3	16	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	c0003	735	59	9	9	32	4	5	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	c0004	735	2	0	0	1	0	1	copy fasta	ARL10	chr5	176360487	176386909
ARL10_chr5_176360487_176386909	0/0	c0005	735	1	1	0	0	0	0	copy fasta	ARL10	chr5	176360487	176386909
ARL11_chr13_49623507_49638872	1/0	c0001	591	276	74	31	134	10	26	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/1	c0002	591	99	6	32	42	6	12	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	c0003	591	59	7	11	34	0	7	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	c0004	591	6	6	0	0	0	0	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	c0005	591	6	0	3	2	0	1	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	c0006	591	3	0	1	0	0	2	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	c0007	591	3	2	1	0	0	0	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	c0008	591	1	0	0	1	0	0	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	c0009	591	1	1	0	0	0	0	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	c0010	591	1	0	1	0	0	0	copy fasta	ARL11	chr13	49623507	49638872
ARL11_chr13_49623507_49638872	0/0	c0011	591	1	0	0	1	0	0	copy fasta	ARL11	chr13	49623507	49638872
ARL13A_chrX_100964708_100995831	1/1	c0001	771	249	63	46	105	8	25	copy fasta	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	c0002	771	29	12	11	2	1	3	copy fasta	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	c0003	771	1	1	0	0	0	0	copy fasta	ARL13A	chrX	100964708	100995831
ARL13A_chrX_100964708_100995831	0/0	c0004	771	1	0	0	0	0	1	copy fasta	ARL13A	chrX	100964708	100995831
ARL13B_chr3_93975155_94060678	1/1	c0001	1287	217	64	43	70	8	30	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	c0002	1287	22	1	4	12	1	4	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	c0003	1288	16	6	7	1	0	2	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	c0004	1287	2	0	2	0	0	0	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	c0005	1287	1	0	0	0	1	0	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	c0006	1288	1	0	0	0	0	1	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	c0007	1287	1	0	0	1	0	0	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	c0008	1287	1	0	0	0	0	1	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	c0009	1287	1	1	0	0	0	0	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	c0010	1287	1	0	0	1	0	0	copy fasta	ARL13B	chr3	93975155	94060678
ARL13B_chr3_93975155_94060678	0/0	c0011	1287	1	0	0	1	0	0	copy fasta	ARL13B	chr3	93975155	94060678
ARL14EPL_chr5_116027472_116064489	0/1	c0001	459	281	74	53	111	13	29	copy fasta	ARL14EPL	chr5	116027472	116064489
ARL14EPL_chr5_116027472_116064489	1/0	c0002	459	128	7	27	73	5	15	copy fasta	ARL14EPL	chr5	116027472	116064489
ARL14EPL_chr5_116027472_116064489	0/0	c0003	459	48	8	0	40	0	0	copy fasta	ARL14EPL	chr5	116027472	116064489
ARL14EPL_chr5_116027472_116064489	0/0	c0004	459	2	0	0	2	0	0	copy fasta	ARL14EPL	chr5	116027472	116064489
ARL14EPL_chr5_116027472_116064489	0/0	c0005	459	1	0	1	0	0	0	copy fasta	ARL14EPL	chr5	116027472	116064489
ARL14EPL_chr5_116027472_116064489	0/0	c0006	459	1	0	1	0	0	0	copy fasta	ARL14EPL	chr5	116027472	116064489
ARL14EPL_chr5_116027472_116064489	0/0	c0007	459	1	1	0	0	0	0	copy fasta	ARL14EPL	chr5	116027472	116064489
ARL14EP_chr11_30318104_30343223	1/1	c0001	783	395	89	74	176	10	44	copy fasta	ARL14EP	chr11	30318104	30343223
ARL14EP_chr11_30318104_30343223	0/0	c0002	783	5	5	0	0	0	0	copy fasta	ARL14EP	chr11	30318104	30343223
ARL14_chr3_160672160_160683448	1/1	c0001	579	414	79	84	187	16	46	copy fasta	ARL14	chr3	160672160	160683448
ARL14_chr3_160672160_160683448	0/0	c0002	579	11	11	0	0	0	0	copy fasta	ARL14	chr3	160672160	160683448
ARL14_chr3_160672160_160683448	0/0	c0003	579	3	3	0	0	0	0	copy fasta	ARL14	chr3	160672160	160683448
ARL14_chr3_160672160_160683448	0/0	c0004	579	1	1	0	0	0	0	copy fasta	ARL14	chr3	160672160	160683448