JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLPPR5_chr1_98885245_99009861	0/0	c0006	966	1	1	0	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	c0007	966	1	0	1	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	c0008	966	1	1	0	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	c0009	966	1	1	0	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	c0010	966	1	1	0	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLPPR5_chr1_98885245_99009861	0/0	c0011	966	1	1	0	0	0	0	copy fasta	PLPPR5	chr1	98885245	99009861
PLRG1_chr4_154530005_154555400	1/1	c0001	1545	313	66	59	140	11	35	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	c0002	1545	96	16	21	39	5	15	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	c0003	1545	13	13	0	0	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	c0004	1545	3	0	0	3	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	c0005	1545	2	2	0	0	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	c0006	1545	1	0	0	1	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	c0007	1545	1	1	0	0	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLRG1_chr4_154530005_154555400	0/0	c0008	1545	1	0	0	1	0	0	copy fasta	PLRG1	chr4	154530005	154555400
PLS1_chr3_142591393_142718664	0/0	c0001	1890	176	60	33	60	10	13	copy fasta	PLS1	chr3	142591393	142718664
PLS1_chr3_142591393_142718664	1/1	c0002	1890	73	4	12	46	2	7	copy fasta	PLS1	chr3	142591393	142718664
PLS1_chr3_142591393_142718664	0/0	c0003	1890	14	14	0	0	0	0	copy fasta	PLS1	chr3	142591393	142718664
PLS1_chr3_142591393_142718664	0/0	c0004	1890	4	0	4	0	0	0	copy fasta	PLS1	chr3	142591393	142718664
PLS1_chr3_142591393_142718664	0/0	c0005	1890	4	3	1	0	0	0	copy fasta	PLS1	chr3	142591393	142718664
PLS1_chr3_142591393_142718664	0/0	c0006	1890	2	2	0	0	0	0	copy fasta	PLS1	chr3	142591393	142718664
PLS1_chr3_142591393_142718664	0/0	c0007	1890	1	0	1	0	0	0	copy fasta	PLS1	chr3	142591393	142718664
PLS1_chr3_142591393_142718664	0/0	c0008	1890	1	0	1	0	0	0	copy fasta	PLS1	chr3	142591393	142718664
PLS1_chr3_142591393_142718664	0/0	c0009	1890	1	1	0	0	0	0	copy fasta	PLS1	chr3	142591393	142718664
PLS3_chrX_115556174_115655861	1/1	c0001	1893	207	45	39	92	6	23	copy fasta	PLS3	chrX	115556174	115655861
PLS3_chrX_115556174_115655861	0/0	c0002	1893	35	22	4	6	0	3	copy fasta	PLS3	chrX	115556174	115655861
PLS3_chrX_115556174_115655861	0/0	c0003	1893	8	4	4	0	0	0	copy fasta	PLS3	chrX	115556174	115655861
PLS3_chrX_115556174_115655861	0/0	c0004	1893	1	0	0	0	1	0	copy fasta	PLS3	chrX	115556174	115655861
PLS3_chrX_115556174_115655861	0/0	c0005	1893	1	1	0	0	0	0	copy fasta	PLS3	chrX	115556174	115655861
PLS3_chrX_115556174_115655861	0/0	c0006	1893	1	1	0	0	0	0	copy fasta	PLS3	chrX	115556174	115655861
PLS3_chrX_115556174_115655861	0/0	c0007	1893	1	1	0	0	0	0	copy fasta	PLS3	chrX	115556174	115655861
PLSCR1_chr3_146510180_146549607	1/1	c0001	957	296	83	53	111	15	32	copy fasta	PLSCR1	chr3	146510180	146549607
PLSCR1_chr3_146510180_146549607	0/0	c0002	957	27	2	3	16	2	4	copy fasta	PLSCR1	chr3	146510180	146549607
PLSCR1_chr3_146510180_146549607	0/0	c0003	957	10	0	7	0	1	2	copy fasta	PLSCR1	chr3	146510180	146549607
PLSCR1_chr3_146510180_146549607	0/0	c0004	957	7	7	0	0	0	0	copy fasta	PLSCR1	chr3	146510180	146549607
PLSCR1_chr3_146510180_146549607	0/0	c0005	957	1	0	0	1	0	0	copy fasta	PLSCR1	chr3	146510180	146549607
PLSCR1_chr3_146510180_146549607	0/0	c0006	942	1	0	1	0	0	0	copy fasta	PLSCR1	chr3	146510180	146549607
PLSCR2_chr3_146428288_146474561	1/1	c0001	675	349	78	57	166	12	34	copy fasta	PLSCR2	chr3	146428288	146474561
PLSCR2_chr3_146428288_146474561	0/0	c0002	675	12	0	1	11	0	0	copy fasta	PLSCR2	chr3	146428288	146474561
PLSCR2_chr3_146428288_146474561	0/0	c0003	675	1	1	0	0	0	0	copy fasta	PLSCR2	chr3	146428288	146474561
PLSCR2_chr3_146428288_146474561	0/0	c0004	675	1	0	0	1	0	0	copy fasta	PLSCR2	chr3	146428288	146474561
PLSCR2_chr3_146428288_146474561	0/0	c0005	675	1	1	0	0	0	0	copy fasta	PLSCR2	chr3	146428288	146474561
PLSCR3_chr17_7384727_7399525	1/0	c0001	888	222	44	41	120	3	13	copy fasta	PLSCR3	chr17	7384727	7399525
PLSCR3_chr17_7384727_7399525	0/0	c0002	888	181	41	43	56	13	28	copy fasta	PLSCR3	chr17	7384727	7399525
PLSCR3_chr17_7384727_7399525	0/0	c0003	888	34	0	4	29	0	1	copy fasta	PLSCR3	chr17	7384727	7399525
PLSCR3_chr17_7384727_7399525	0/0	c0004	888	5	5	0	0	0	0	copy fasta	PLSCR3	chr17	7384727	7399525
PLSCR3_chr17_7384727_7399525	0/0	c0005	888	5	5	0	0	0	0	copy fasta	PLSCR3	chr17	7384727	7399525
PLSCR3_chr17_7384727_7399525	0/0	c0006	888	3	3	0	0	0	0	copy fasta	PLSCR3	chr17	7384727	7399525
PLSCR3_chr17_7384727_7399525	0/0	c0007	888	2	0	0	2	0	0	copy fasta	PLSCR3	chr17	7384727	7399525
PLSCR3_chr17_7384727_7399525	0/1	c0008	888	1	0	0	0	0	0	copy fasta	PLSCR3	chr17	7384727	7399525
PLSCR3_chr17_7384727_7399525	0/0	c0009	888	1	0	0	1	0	0	copy fasta	PLSCR3	chr17	7384727	7399525