JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLSCR4_chr3_146187335_146256105	1/0	c0001	990	262	56	39	132	6	28	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/1	c0002	990	84	7	28	33	4	11	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	c0003	990	24	22	2	0	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	c0004	990	4	4	0	0	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	c0005	990	3	3	0	0	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	c0006	990	1	0	0	0	0	1	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	c0007	990	1	0	1	0	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR4_chr3_146187335_146256105	0/0	c0008	990	1	0	0	1	0	0	copy fasta	PLSCR4	chr3	146187335	146256105
PLSCR5_chr3_146580837_146610346	1/1	c0001	816	405	86	62	191	18	46	copy fasta	PLSCR5	chr3	146580837	146610346
PLSCR5_chr3_146580837_146610346	0/0	c0002	816	6	6	0	0	0	0	copy fasta	PLSCR5	chr3	146580837	146610346
PLSCR5_chr3_146580837_146610346	0/0	c0003	816	3	0	0	3	0	0	copy fasta	PLSCR5	chr3	146580837	146610346
PLSCR5_chr3_146580837_146610346	0/0	c0004	816	1	1	0	0	0	0	copy fasta	PLSCR5	chr3	146580837	146610346
PLSCR5_chr3_146580837_146610346	0/0	c0005	816	1	1	0	0	0	0	copy fasta	PLSCR5	chr3	146580837	146610346
PLTP_chr20_45893622_45917155	1/1	c0001	1482	409	79	70	201	12	45	copy fasta	PLTP	chr20	45893622	45917155
PLTP_chr20_45893622_45917155	0/0	c0002	1482	6	6	0	0	0	0	copy fasta	PLTP	chr20	45893622	45917155
PLTP_chr20_45893622_45917155	0/0	c0003	1482	4	0	0	4	0	0	copy fasta	PLTP	chr20	45893622	45917155
PLTP_chr20_45893622_45917155	0/0	c0004	1482	4	4	0	0	0	0	copy fasta	PLTP	chr20	45893622	45917155
PLTP_chr20_45893622_45917155	0/0	c0005	1482	2	2	0	0	0	0	copy fasta	PLTP	chr20	45893622	45917155
PLTP_chr20_45893622_45917155	0/0	c0006	1482	1	0	0	1	0	0	copy fasta	PLTP	chr20	45893622	45917155
PLTP_chr20_45893622_45917155	0/0	c0007	1482	1	0	1	0	0	0	copy fasta	PLTP	chr20	45893622	45917155
PLTP_chr20_45893622_45917155	0/0	c0008	1482	1	1	0	0	0	0	copy fasta	PLTP	chr20	45893622	45917155
PLTP_chr20_45893622_45917155	0/0	c0009	1482	1	0	0	0	0	1	copy fasta	PLTP	chr20	45893622	45917155
PLTP_chr20_45893622_45917155	0/0	c0010	1482	1	1	0	0	0	0	copy fasta	PLTP	chr20	45893622	45917155
PLTP_chr20_45893622_45917155	0/0	c0011	1482	1	1	0	0	0	0	copy fasta	PLTP	chr20	45893622	45917155
PLTP_chr20_45893622_45917155	0/0	c0012	1482	1	0	1	0	0	0	copy fasta	PLTP	chr20	45893622	45917155
PLVAP_chr19_17346455_17382342	1/1	c0001	1329	413	96	71	177	18	49	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	c0002	1329	7	0	7	0	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	c0003	1329	7	2	0	5	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	c0004	1329	1	1	0	0	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	c0005	1329	1	0	0	1	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	c0006	1329	1	0	0	1	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	c0007	1329	1	0	0	1	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	c0008	1329	1	0	0	1	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	c0009	1329	1	1	0	0	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	c0010	1329	1	0	0	0	0	1	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	c0011	1329	1	0	0	1	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLVAP_chr19_17346455_17382342	0/0	c0012	1329	1	0	0	1	0	0	copy fasta	PLVAP	chr19	17346455	17382342
PLXDC1_chr17_39058313_39156637	1/1	c0001	1503	173	61	23	58	8	21	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	c0002	1503	82	7	26	39	2	8	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	c0003	1503	27	2	8	14	1	2	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	c0004	1503	18	0	0	18	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	c0005	1503	9	0	3	1	1	4	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	c0006	1503	3	0	0	3	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	c0007	1503	1	0	0	0	0	1	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	c0008	1503	1	0	0	1	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	c0009	1503	1	0	0	0	0	1	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	c0010	1503	1	0	0	0	0	1	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	c0011	1503	1	0	0	1	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	c0012	1503	1	1	0	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC1_chr17_39058313_39156637	0/0	c0013	1503	1	0	0	1	0	0	copy fasta	PLXDC1	chr17	39058313	39156637