JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLXDC1_chr17_39058313_39156637	0/0	c0014	1503	1	1	0	0	0	0	copy fasta	PLXDC1	chr17	39058313	39156637
PLXDC2_chr10_19811432_20294856	0/0	c0001	1590	94	51	16	11	3	13	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/1	c0002	1590	49	17	9	14	0	8	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	1/0	c0003	1590	23	0	8	8	0	6	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	c0004	1590	7	3	1	1	1	1	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	c0005	1590	3	0	1	2	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	c0006	1590	3	3	0	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXDC2_chr10_19811432_20294856	0/0	c0007	1590	1	0	1	0	0	0	copy fasta	PLXDC2	chr10	19811432	20294856
PLXNA1_chr3_126978115_127042389	0/0	c0001	5691	116	13	26	60	5	12	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0002	5691	53	0	5	37	1	10	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	1/1	c0003	5691	31	9	6	12	0	2	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0004	5691	24	7	2	10	2	3	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0005	5691	23	1	2	16	2	2	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0006	5691	18	17	1	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0007	5691	12	10	2	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0008	5691	12	5	7	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0009	5691	5	5	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0010	5691	4	4	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0011	5691	4	0	1	2	0	1	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0012	5691	3	3	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0013	5691	3	0	2	0	1	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0014	5691	3	3	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0015	5691	2	1	1	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0016	5691	2	0	0	1	0	1	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0017	5691	2	2	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0018	5691	2	0	0	2	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0019	5691	2	0	0	2	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0020	5691	2	0	1	0	1	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0021	5691	1	1	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0022	5691	1	1	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0023	5691	1	1	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0024	5691	1	1	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0025	5691	1	0	0	0	0	1	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0026	5691	1	1	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0027	5691	1	0	0	0	0	1	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0028	5680	1	0	0	1	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0029	5691	1	0	0	1	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0030	5691	1	1	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0031	5691	1	0	0	1	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0032	5691	1	0	0	0	0	1	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0033	5691	1	0	0	1	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0034	5691	1	0	0	1	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0035	5691	1	0	0	1	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0036	5691	1	0	0	1	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0037	5691	1	1	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0038	5691	1	1	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0039	5691	1	0	0	0	0	1	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0040	5691	1	0	0	1	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0041	5691	1	1	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA1_chr3_126978115_127042389	0/0	c0042	5691	1	0	0	0	0	1	copy fasta	PLXNA1	chr3	126978115	127042389