JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLXNA1_chr3_126978115_127042389	0/0	c0043	5691	1	1	0	0	0	0	copy fasta	PLXNA1	chr3	126978115	127042389
PLXNA2_chr1_208017242_208249384	0/0	c0001	5685	50	9	7	25	2	7	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	1/0	c0002	5685	40	6	9	19	1	4	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0003	5685	25	12	5	5	1	2	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0004	5685	24	13	2	8	0	1	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0005	5685	23	2	5	14	0	2	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0006	5685	13	2	1	5	3	2	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0007	5685	12	0	1	7	1	3	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0008	5685	11	0	1	9	0	1	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/1	c0009	5685	9	0	3	0	0	5	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0010	5685	9	0	6	2	1	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0011	5685	7	0	3	4	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0012	5685	6	6	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0013	5685	5	0	2	2	0	1	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0014	5685	4	0	0	4	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0015	5685	4	0	2	1	1	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0016	5685	4	4	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0017	5685	3	3	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0018	5685	2	0	0	2	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0019	5685	2	0	0	2	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0020	5685	2	0	0	2	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0021	5685	2	0	0	2	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0022	5685	2	0	0	2	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0023	5685	2	0	0	2	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0024	5685	2	2	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0025	5685	2	2	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0026	5685	2	1	1	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0027	5685	2	2	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0028	5685	2	2	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0029	5685	2	2	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0030	5685	2	0	0	1	0	1	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0031	5685	2	2	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0032	5685	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0033	5685	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0034	5685	1	0	0	1	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0035	5685	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0036	5685	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0037	5685	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0038	5685	1	0	0	1	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0039	5685	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0040	5685	1	0	1	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0041	5685	1	0	1	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0042	5685	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0043	5685	1	0	0	1	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0044	5685	1	0	0	1	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0045	5685	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0046	5685	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0047	5685	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0048	5685	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0049	5685	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384