JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLXNA2_chr1_208017242_208249384	0/0	c0050	5685	1	0	0	1	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0051	5685	1	0	0	0	0	1	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0052	5685	1	0	1	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0053	5685	1	0	0	0	0	1	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0054	5685	1	0	0	1	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0055	5685	1	0	0	0	0	1	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0056	5685	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0057	5685	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0058	5685	1	0	1	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0059	5685	1	0	1	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0060	5685	1	0	1	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0061	5685	1	0	0	1	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0062	5685	1	0	0	1	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0063	5685	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0064	5685	1	1	0	0	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0065	5685	1	0	0	1	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA2_chr1_208017242_208249384	0/0	c0066	5685	1	0	0	1	0	0	copy fasta	PLXNA2	chr1	208017242	208249384
PLXNA3_chrX_154453281_154482779	0/0	c0001	5616	131	6	30	73	8	14	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	1/0	c0002	5616	59	31	3	10	1	13	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0003	5616	20	18	1	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0004	5616	5	4	1	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0005	5616	3	2	1	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0006	5616	2	0	2	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0007	5616	2	0	1	0	1	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/1	c0008	5616	2	0	0	0	1	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0009	5616	2	2	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0010	5616	1	1	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0011	5616	1	1	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0012	5616	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0013	5626	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0014	5616	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0015	5616	1	1	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0016	5616	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0017	5616	1	0	1	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0018	5620	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0019	5616	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0020	5615	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0021	5616	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0022	5616	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0023	5616	1	0	1	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0024	5616	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0025	5616	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0026	5616	1	1	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0027	5616	1	1	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0028	5616	1	0	1	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0029	5616	1	1	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0030	5615	1	0	0	1	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0031	5616	1	1	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0032	5616	1	1	0	0	0	0	copy fasta	PLXNA3	chrX	154453281	154482779
PLXNA3_chrX_154453281_154482779	0/0	c0033	5616	1	0	0	0	0	1	copy fasta	PLXNA3	chrX	154453281	154482779