JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLXNA4_chr7_132118340_132581470	0/0	c0039	5685	1	1	0	0	0	0	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNA4_chr7_132118340_132581470	0/0	c0040	5685	1	1	0	0	0	0	copy fasta	PLXNA4	chr7	132118340	132581470
PLXNB1_chr3_48398854_48435086	0/1	c0001	6408	136	24	29	58	9	15	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	1/0	c0002	6408	104	11	20	55	5	12	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0003	6408	13	10	3	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0004	6408	7	5	2	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0005	6408	7	7	0	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0006	6408	5	0	0	5	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0007	6408	5	5	0	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0008	6408	4	0	4	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0009	6408	2	2	0	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0010	6408	2	0	2	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0011	6408	2	2	0	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0012	6408	2	2	0	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0013	6408	2	2	0	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0014	6408	1	1	0	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0015	6408	1	1	0	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0016	6408	1	0	0	1	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0017	6408	1	0	1	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0018	6408	1	0	0	1	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0019	6408	1	0	1	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0020	6408	1	0	1	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0021	6408	1	1	0	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0022	6408	1	1	0	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0023	6408	1	0	0	1	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0024	6408	1	0	0	1	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0025	6408	1	1	0	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0026	6408	1	0	0	1	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0027	6408	1	1	0	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0028	6408	1	0	0	1	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0029	6408	1	0	0	0	0	1	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0030	6408	1	0	0	1	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0031	6408	1	0	0	1	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0032	6408	1	0	0	1	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0033	6408	1	0	1	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0034	6408	1	1	0	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0035	6408	1	1	0	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0036	6408	1	1	0	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0037	6408	1	1	0	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0038	6408	1	1	0	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0039	6408	1	0	0	1	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB1_chr3_48398854_48435086	0/0	c0040	6408	1	1	0	0	0	0	copy fasta	PLXNB1	chr3	48398854	48435086
PLXNB2_chr22_50269979_50312646	1/0	c0001	5517	36	4	13	14	1	3	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0002	5517	34	0	10	9	2	13	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0003	5517	30	4	6	11	2	7	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0004	5517	19	1	0	13	1	4	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0005	5517	16	0	0	16	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0006	5517	13	0	5	7	0	1	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0007	5517	9	7	0	2	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0008	5517	8	4	1	3	0	0	copy fasta	PLXNB2	chr22	50269979	50312646