JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLXNB2_chr22_50269979_50312646	0/0	c0059	5517	1	0	0	0	0	1	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0060	5517	1	0	0	1	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0061	5517	1	0	0	1	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0062	5517	1	0	0	1	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0063	5517	1	1	0	0	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0064	5517	1	1	0	0	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0065	5517	1	1	0	0	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0066	5517	1	0	1	0	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0067	5517	1	0	0	0	1	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0068	5517	1	0	0	0	0	1	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0069	5517	1	0	0	0	0	1	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0070	5517	1	0	1	0	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0071	5517	1	1	0	0	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0072	5517	1	0	0	1	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0073	5517	1	1	0	0	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0074	5517	1	0	0	0	0	1	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0075	5517	1	0	0	1	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0076	5517	1	0	0	1	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0077	5517	1	1	0	0	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0078	5517	1	0	0	1	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0079	5517	1	1	0	0	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0080	5517	1	1	0	0	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0081	5517	1	0	0	1	0	0	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB2_chr22_50269979_50312646	0/0	c0082	5517	1	0	0	0	0	1	copy fasta	PLXNB2	chr22	50269979	50312646
PLXNB3_chrX_153759249_153784341	0/0	c0001	5730	97	11	18	62	0	6	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/1	c0002	5730	53	15	17	9	5	6	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	1/0	c0003	5730	49	9	7	25	2	5	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0004	5730	17	1	4	10	1	1	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0005	5730	14	13	1	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0006	5730	5	0	2	0	0	3	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0007	5730	5	5	0	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0008	5730	3	0	0	0	0	3	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0009	5730	3	0	0	3	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0010	5730	3	3	0	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0011	5730	3	3	0	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0012	5730	2	2	0	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0013	5730	2	0	0	0	0	2	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0014	5730	2	1	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0015	5730	2	0	0	0	2	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0016	5730	2	0	0	0	0	2	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0017	5731	2	0	0	1	0	1	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0018	5730	2	0	0	2	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0019	5731	2	0	0	1	0	1	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0020	5730	2	2	0	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0021	5731	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0022	5730	1	1	0	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0023	5730	1	0	1	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0024	5730	1	1	0	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0025	5730	1	1	0	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0026	5730	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341