JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLXNB3_chrX_153759249_153784341	0/0	c0027	5730	1	0	0	0	0	1	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0028	5730	1	0	1	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0029	5731	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0030	5730	1	1	0	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0031	5730	1	1	0	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0032	5752	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0033	5730	1	0	1	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0034	5731	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0035	5731	1	1	0	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0036	5731	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0037	5730	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0038	5730	1	1	0	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0039	5730	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0040	5732	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0041	5733	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0042	5710	1	1	0	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0043	5732	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0044	5730	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0045	5730	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0046	5731	1	0	0	0	1	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0047	5730	1	1	0	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0048	5730	1	1	0	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0049	5730	1	0	1	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0050	5730	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0051	5730	1	0	0	0	0	1	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0052	5730	1	0	0	0	0	1	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0053	5730	1	1	0	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0054	5730	1	1	0	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0055	5730	1	1	0	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0056	5730	1	0	1	0	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0057	5730	1	0	0	0	0	1	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNB3_chrX_153759249_153784341	0/0	c0058	5729	1	0	0	1	0	0	copy fasta	PLXNB3	chrX	153759249	153784341
PLXNC1_chr12_94143577_94312675	0/0	c0001	4707	70	7	19	31	0	13	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0002	4707	52	9	8	28	1	6	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	1/0	c0003	4707	46	14	11	10	4	6	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0004	4707	31	5	6	13	1	6	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0005	4707	11	0	1	8	1	1	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0006	4707	9	2	2	5	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0007	4707	6	5	1	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0008	4707	6	0	3	0	1	2	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0009	4707	6	5	1	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0010	4707	4	1	0	1	1	1	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0011	4707	4	0	0	4	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0012	4707	4	0	2	2	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/1	c0013	4707	3	1	0	1	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0014	4707	3	3	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0015	4707	3	2	1	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0016	4707	3	2	1	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0017	4707	2	0	1	0	1	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0018	4707	2	1	1	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675