JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARL14_chr3_160672160_160683448	0/0	c0005	579	1	0	0	1	0	0	copy fasta	ARL14	chr3	160672160	160683448
ARL14_chr3_160672160_160683448	0/0	c0006	579	1	0	0	1	0	0	copy fasta	ARL14	chr3	160672160	160683448
ARL14_chr3_160672160_160683448	0/0	c0007	579	1	1	0	0	0	0	copy fasta	ARL14	chr3	160672160	160683448
ARL14_chr3_160672160_160683448	0/0	c0008	579	1	0	0	1	0	0	copy fasta	ARL14	chr3	160672160	160683448
ARL14_chr3_160672160_160683448	0/0	c0009	579	1	1	0	0	0	0	copy fasta	ARL14	chr3	160672160	160683448
ARL15_chr5_53878942_54315573	0/1	c0001	615	158	64	33	29	11	20	copy fasta	ARL15	chr5	53878942	54315573
ARL15_chr5_53878942_54315573	1/0	c0002	615	47	7	15	17	1	6	copy fasta	ARL15	chr5	53878942	54315573
ARL15_chr5_53878942_54315573	0/0	c0003	615	1	1	0	0	0	0	copy fasta	ARL15	chr5	53878942	54315573
ARL16_chr17_81676187_81688797	1/1	c0001	522	441	94	80	203	16	46	copy fasta	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	c0002	522	2	0	0	2	0	0	copy fasta	ARL16	chr17	81676187	81688797
ARL16_chr17_81676187_81688797	0/0	c0003	522	1	0	0	1	0	0	copy fasta	ARL16	chr17	81676187	81688797
ARL17A_chr17_46547756_46584691	0/0	c0001	534	126	48	15	48	6	9	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	c0002	534	9	1	2	0	3	3	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	c0003	534	8	1	4	0	2	1	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	c0004	528	2	0	1	0	1	0	copy fasta	ARL17A	chr17	46547756	46584691
ARL17A_chr17_46547756_46584691	0/0	c0005	534	1	0	0	0	0	1	copy fasta	ARL17A	chr17	46547756	46584691
ARL17B_chr17_46329902_46366766	0/0	c0001	534	26	16	2	4	0	4	copy fasta	ARL17B	chr17	46329902	46366766
ARL1_chr12_101388116_101412772	1/1	c0001	546	397	84	70	177	18	46	copy fasta	ARL1	chr12	101388116	101412772
ARL1_chr12_101388116_101412772	0/0	c0002	546	1	0	0	1	0	0	copy fasta	ARL1	chr12	101388116	101412772
ARL2BP_chr16_57240259_57258635	1/1	c0001	492	365	88	60	163	18	34	copy fasta	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	c0002	492	3	0	3	0	0	0	copy fasta	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	c0003	492	3	0	0	3	0	0	copy fasta	ARL2BP	chr16	57240259	57258635
ARL2BP_chr16_57240259_57258635	0/0	c0004	492	1	0	1	0	0	0	copy fasta	ARL2BP	chr16	57240259	57258635
ARL2_chr11_65009160_65027184	1/1	c0001	555	185	25	37	86	4	31	copy fasta	ARL2	chr11	65009160	65027184
ARL2_chr11_65009160_65027184	0/0	c0002	555	151	69	31	33	12	6	copy fasta	ARL2	chr11	65009160	65027184
ARL2_chr11_65009160_65027184	0/0	c0003	555	1	1	0	0	0	0	copy fasta	ARL2	chr11	65009160	65027184
ARL2_chr11_65009160_65027184	0/0	c0004	555	1	0	0	0	0	1	copy fasta	ARL2	chr11	65009160	65027184
ARL2_chr11_65009160_65027184	0/0	c0005	555	1	1	0	0	0	0	copy fasta	ARL2	chr11	65009160	65027184
ARL2_chr11_65009160_65027184	0/0	c0006	555	1	0	0	1	0	0	copy fasta	ARL2	chr11	65009160	65027184
ARL3_chr10_102668731_102719397	1/1	c0001	549	422	94	78	197	12	39	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	c0002	549	1	0	0	1	0	0	copy fasta	ARL3	chr10	102668731	102719397
ARL3_chr10_102668731_102719397	0/0	c0003	549	1	0	0	0	0	1	copy fasta	ARL3	chr10	102668731	102719397
ARL4A_chr7_12682633_12695958	1/1	c0001	603	420	93	73	188	18	46	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	c0002	603	4	4	0	0	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	c0003	603	3	3	0	0	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4A_chr7_12682633_12695958	0/0	c0004	603	1	0	1	0	0	0	copy fasta	ARL4A	chr7	12682633	12695958
ARL4C_chr2_234488041_234502081	1/1	c0001	606	467	99	84	220	18	44	copy fasta	ARL4C	chr2	234488041	234502081
ARL4C_chr2_234488041_234502081	0/0	c0002	606	1	1	0	0	0	0	copy fasta	ARL4C	chr2	234488041	234502081
ARL4D_chr17_43393993_43406137	1/1	c0001	606	419	87	76	192	14	48	copy fasta	ARL4D	chr17	43393993	43406137
ARL4D_chr17_43393993_43406137	0/0	c0002	606	4	4	0	0	0	0	copy fasta	ARL4D	chr17	43393993	43406137
ARL4D_chr17_43393993_43406137	0/0	c0003	606	4	4	0	0	0	0	copy fasta	ARL4D	chr17	43393993	43406137
ARL4D_chr17_43393993_43406137	0/0	c0004	606	1	1	0	0	0	0	copy fasta	ARL4D	chr17	43393993	43406137
ARL5A_chr2_151793797_151833421	1/1	c0001	540	368	84	45	186	14	37	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	c0002	540	9	4	1	1	0	3	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	c0003	540	2	0	0	2	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5A_chr2_151793797_151833421	0/0	c0004	540	1	0	0	1	0	0	copy fasta	ARL5A	chr2	151793797	151833421
ARL5B_chr10_18654431_18686639	1/1	c0001	540	419	89	79	193	13	43	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	c0002	540	11	0	0	10	0	1	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	c0003	540	8	7	1	0	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5B_chr10_18654431_18686639	0/0	c0004	540	5	0	4	0	1	0	copy fasta	ARL5B	chr10	18654431	18686639