JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PLXNC1_chr12_94143577_94312675	0/0	c0019	4707	2	2	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0020	4707	2	0	2	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0021	4707	2	2	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0022	4707	2	2	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0023	4707	2	0	1	0	0	1	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0024	4707	1	0	1	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0025	4707	1	1	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0026	4707	1	0	0	0	1	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0027	4707	1	1	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0028	4707	1	1	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0029	4707	1	1	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0030	4707	1	1	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0031	4707	1	0	0	1	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0032	4707	1	0	0	0	1	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0033	4707	1	1	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0034	4707	1	1	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0035	4707	1	1	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0036	4707	1	1	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0037	4707	1	1	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0038	4707	1	1	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0039	4707	1	1	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0040	4707	1	1	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0041	4707	1	1	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0042	4707	1	1	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0043	4707	1	1	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0044	4707	1	1	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0045	4707	1	1	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXNC1_chr12_94143577_94312675	0/0	c0046	4707	1	1	0	0	0	0	copy fasta	PLXNC1	chr12	94143577	94312675
PLXND1_chr3_129550214_129611676	0/0	c0001	5778	110	8	27	54	6	15	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	c0002	5778	53	2	5	39	0	7	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	c0003	5778	44	0	0	40	0	4	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	c0004	5778	24	3	1	15	1	4	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	c0005	5778	23	9	8	1	1	4	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	c0006	5778	13	11	2	0	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	c0007	5778	13	2	5	0	5	1	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/1	c0008	5778	12	1	8	0	1	1	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	c0009	5778	10	0	4	6	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	c0010	5778	7	0	3	0	0	4	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	c0011	5778	6	4	0	2	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	c0012	5778	6	5	1	0	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	c0013	5778	5	0	0	5	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	c0014	5778	5	5	0	0	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	c0015	5778	5	5	0	0	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	c0016	5778	5	5	0	0	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	c0017	5778	4	2	1	0	1	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	c0018	5778	4	4	0	0	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	c0019	5778	3	2	1	0	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	c0020	5778	3	0	0	0	0	3	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	c0021	5778	3	2	1	0	0	0	copy fasta	PLXND1	chr3	129550214	129611676
PLXND1_chr3_129550214_129611676	0/0	c0022	5778	2	0	0	0	1	1	copy fasta	PLXND1	chr3	129550214	129611676