JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PM20D1_chr1_205823025_205855132	0/0	c0002	1509	53	0	15	27	4	7	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0003	1509	51	3	10	33	1	4	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0004	1509	27	12	1	12	0	2	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0005	1509	26	7	15	0	1	3	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0006	1509	20	0	1	17	0	2	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0007	1509	18	0	0	17	0	1	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0008	1509	18	0	0	15	0	3	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0009	1509	17	12	3	1	0	1	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	1/0	c0010	1509	16	0	0	9	1	5	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0011	1509	11	8	2	1	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0012	1509	9	0	1	5	0	3	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0013	1509	8	6	1	0	1	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0014	1509	7	5	1	1	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0015	1509	6	1	0	5	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0016	1509	6	6	0	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0017	1509	5	0	0	3	0	2	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0018	1509	4	4	0	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0019	1509	4	3	0	0	0	1	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0020	1509	4	0	0	4	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0021	1509	3	1	0	0	2	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0022	1509	3	2	0	1	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0023	1509	3	2	1	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0024	1509	3	3	0	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0025	1509	3	1	2	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0026	1509	3	0	0	2	0	1	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0027	1509	3	0	0	3	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0028	1509	3	0	3	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0029	1509	2	0	2	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0030	1509	2	0	1	0	1	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0031	1509	2	2	0	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0032	1509	2	1	0	0	0	1	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0033	1509	2	0	0	2	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0034	1509	1	1	0	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0035	1509	1	1	0	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0036	1509	1	0	1	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0037	1509	1	0	1	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0038	1509	1	1	0	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0039	1509	1	1	0	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0040	1509	1	0	0	1	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0041	1509	1	1	0	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0042	1509	1	1	0	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0043	1509	1	0	1	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0044	1509	1	0	0	1	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0045	1509	1	0	0	1	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0046	1509	1	0	0	1	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0047	1509	1	1	0	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0048	1509	1	0	0	1	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0049	1509	1	0	0	1	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0050	1509	1	1	0	0	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D1_chr1_205823025_205855132	0/0	c0051	1509	1	0	0	1	0	0	copy fasta	PM20D1	chr1	205823025	205855132