JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PM20D1_chr1_205823025_205855132	0/0	c0052	1509	1	0	0	1	0	0	copy fasta	PM20D1	chr1	205823025	205855132
PM20D2_chr6_89141055_89170565	1/1	c0001	1311	361	87	76	147	14	35	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	0/0	c0002	1311	7	0	0	6	0	1	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	0/0	c0003	1311	1	1	0	0	0	0	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	0/0	c0004	1311	1	0	0	1	0	0	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	0/0	c0005	1311	1	1	0	0	0	0	copy fasta	PM20D2	chr6	89141055	89170565
PM20D2_chr6_89141055_89170565	0/0	c0006	1311	1	1	0	0	0	0	copy fasta	PM20D2	chr6	89141055	89170565
PMAIP1_chr18_59894996_59909305	1/1	c0001	165	453	96	77	216	17	45	copy fasta	PMAIP1	chr18	59894996	59909305
PMAIP1_chr18_59894996_59909305	0/0	c0002	165	5	0	3	0	1	1	copy fasta	PMAIP1	chr18	59894996	59909305
PMCH_chr12_102191459_102202833	1/1	c0001	498	401	95	70	187	12	35	copy fasta	PMCH	chr12	102191459	102202833
PMCH_chr12_102191459_102202833	0/0	c0002	498	1	0	0	0	0	1	copy fasta	PMCH	chr12	102191459	102202833
PMCH_chr12_102191459_102202833	0/0	c0003	498	1	1	0	0	0	0	copy fasta	PMCH	chr12	102191459	102202833
PMCH_chr12_102191459_102202833	0/0	c0004	498	1	0	0	1	0	0	copy fasta	PMCH	chr12	102191459	102202833
PMEL_chr12_55949105_55971042	0/0	c0001	1986	195	30	43	96	6	20	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	0/0	c0002	1986	76	0	17	38	5	16	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	1/1	c0003	1986	75	30	18	14	7	4	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	0/0	c0004	1986	10	9	1	0	0	0	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	0/0	c0005	1986	8	6	2	0	0	0	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	0/0	c0006	1986	8	7	1	0	0	0	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	0/0	c0007	1986	7	0	0	7	0	0	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	0/0	c0008	1986	5	0	0	5	0	0	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	0/0	c0009	1986	2	0	2	0	0	0	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	0/0	c0010	1986	2	2	0	0	0	0	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	0/0	c0011	1986	1	0	1	0	0	0	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	0/0	c0012	1986	1	0	0	1	0	0	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	0/0	c0013	1986	1	1	0	0	0	0	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	0/0	c0014	1986	1	0	0	1	0	0	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	0/0	c0015	1986	1	1	0	0	0	0	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	0/0	c0016	1986	1	1	0	0	0	0	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	0/0	c0017	1986	1	1	0	0	0	0	copy fasta	PMEL	chr12	55949105	55971042
PMEL_chr12_55949105_55971042	0/0	c0018	1986	1	0	1	0	0	0	copy fasta	PMEL	chr12	55949105	55971042
PMEPA1_chr20_57643396_57715015	0/0	c0001	864	158	17	37	71	8	25	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/1	c0002	864	85	23	12	41	3	5	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	1/0	c0003	864	74	24	27	15	2	5	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	c0004	864	28	26	2	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	c0005	864	7	7	0	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	c0006	864	3	0	1	0	1	1	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	c0007	864	1	0	1	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	c0008	864	1	0	0	0	0	1	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	c0009	864	1	1	0	0	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	c0010	864	1	0	0	1	0	0	copy fasta	PMEPA1	chr20	57643396	57715015
PMEPA1_chr20_57643396_57715015	0/0	c0011	864	1	0	0	0	0	1	copy fasta	PMEPA1	chr20	57643396	57715015
PMF1_chr1_156208007_156245042	1/1	c0001	618	186	22	42	90	5	25	copy fasta	PMF1	chr1	156208007	156245042
PMF1_chr1_156208007_156245042	0/0	c0002	618	91	51	7	24	0	9	copy fasta	PMF1	chr1	156208007	156245042
PMF1_chr1_156208007_156245042	0/0	c0003	618	72	9	13	41	4	5	copy fasta	PMF1	chr1	156208007	156245042
PMF1_chr1_156208007_156245042	0/0	c0004	618	4	1	3	0	0	0	copy fasta	PMF1	chr1	156208007	156245042
PMF1_chr1_156208007_156245042	0/0	c0005	618	3	0	2	0	1	0	copy fasta	PMF1	chr1	156208007	156245042
PMF1_chr1_156208007_156245042	0/0	c0006	618	3	0	3	0	0	0	copy fasta	PMF1	chr1	156208007	156245042
PMF1_chr1_156208007_156245042	0/0	c0007	618	1	0	0	0	0	1	copy fasta	PMF1	chr1	156208007	156245042
PMF1_chr1_156208007_156245042	0/0	c0008	618	1	0	0	1	0	0	copy fasta	PMF1	chr1	156208007	156245042