JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PMF1_chr1_156208007_156245042	0/0	c0009	618	1	1	0	0	0	0	copy fasta	PMF1	chr1	156208007	156245042
PMF1_chr1_156208007_156245042	0/0	c0010	618	1	0	0	1	0	0	copy fasta	PMF1	chr1	156208007	156245042
PMF1_chr1_156208007_156245042	0/0	c0011	618	1	0	0	1	0	0	copy fasta	PMF1	chr1	156208007	156245042
PMFBP1_chr16_72114097_72177155	1/0	c0001	3024	130	24	27	62	4	12	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/1	c0002	3024	124	44	9	56	3	11	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	c0003	3024	34	0	7	20	1	6	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	c0004	3024	29	1	9	7	2	10	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	c0005	3024	5	0	0	5	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	c0006	3024	3	0	0	0	3	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	c0007	3021	3	3	0	0	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	c0008	3024	2	1	0	0	1	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	c0009	3024	1	0	0	0	0	1	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	c0010	3024	1	0	1	0	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	c0011	3024	1	0	1	0	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	c0012	3024	1	0	0	1	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	c0013	3024	1	0	0	1	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	c0014	3024	1	1	0	0	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	c0015	3024	1	0	0	1	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	c0016	3024	1	0	0	1	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	c0017	3024	1	0	0	1	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	c0018	3024	1	0	0	1	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	c0019	3024	1	1	0	0	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	c0020	3024	1	0	0	1	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	c0021	3024	1	1	0	0	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMFBP1_chr16_72114097_72177155	0/0	c0022	3024	1	0	0	1	0	0	copy fasta	PMFBP1	chr16	72114097	72177155
PMIS2_chr19_35581173_35592296	1/1	c0001	453	267	66	53	105	8	33	copy fasta	PMIS2	chr19	35581173	35592296
PMIS2_chr19_35581173_35592296	0/0	c0002	453	102	26	20	39	3	14	copy fasta	PMIS2	chr19	35581173	35592296
PMIS2_chr19_35581173_35592296	0/0	c0003	452	72	2	11	57	1	1	copy fasta	PMIS2	chr19	35581173	35592296
PMIS2_chr19_35581173_35592296	0/0	c0004	453	2	2	0	0	0	0	copy fasta	PMIS2	chr19	35581173	35592296
PMIS2_chr19_35581173_35592296	0/0	c0005	453	1	0	0	1	0	0	copy fasta	PMIS2	chr19	35581173	35592296
PML_chr15_73989716_74052827	1/0	c0001	2649	267	63	35	131	7	30	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/1	c0002	2649	33	0	20	1	5	6	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	c0003	2650	13	2	4	6	0	1	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	c0004	2649	8	5	1	1	0	1	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	c0005	2649	4	2	0	0	2	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	c0006	2650	2	2	0	0	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	c0007	2649	1	0	1	0	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	c0008	2650	1	0	1	0	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	c0009	2650	1	1	0	0	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	c0010	2650	1	0	0	1	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	c0011	2650	1	0	1	0	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	c0012	2650	1	0	1	0	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	c0013	2649	1	1	0	0	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	c0014	2649	1	1	0	0	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	c0015	2649	1	0	0	1	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	c0016	2649	1	0	0	0	0	1	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	c0017	2649	1	0	1	0	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	c0018	2649	1	0	0	1	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	c0019	2649	1	0	1	0	0	0	copy fasta	PML	chr15	73989716	74052827
PML_chr15_73989716_74052827	0/0	c0020	2649	1	0	0	0	0	1	copy fasta	PML	chr15	73989716	74052827