JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PML_chr15_73989716_74052827	0/0	c0021	2649	1	1	0	0	0	0	copy fasta	PML	chr15	73989716	74052827
PMM1_chr22_41571900_41594840	1/1	c0001	789	325	81	60	134	14	34	copy fasta	PMM1	chr22	41571900	41594840
PMM1_chr22_41571900_41594840	0/0	c0002	789	2	0	2	0	0	0	copy fasta	PMM1	chr22	41571900	41594840
PMM1_chr22_41571900_41594840	0/0	c0003	789	2	2	0	0	0	0	copy fasta	PMM1	chr22	41571900	41594840
PMM1_chr22_41571900_41594840	0/0	c0004	789	1	1	0	0	0	0	copy fasta	PMM1	chr22	41571900	41594840
PMM2_chr16_8792839_8854325	1/1	c0001	741	386	96	69	168	13	38	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	c0002	741	5	1	4	0	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	c0003	741	4	0	0	4	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	c0004	741	4	0	0	4	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	c0005	741	2	0	2	0	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	c0006	741	2	0	1	0	1	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	c0007	741	1	0	0	1	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	c0008	741	1	0	0	1	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	c0009	741	1	0	0	0	0	1	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	c0010	741	1	1	0	0	0	0	copy fasta	PMM2	chr16	8792839	8854325
PMM2_chr16_8792839_8854325	0/0	c0011	741	1	0	0	0	0	1	copy fasta	PMM2	chr16	8792839	8854325
PMP22_chr17_15224779_15270326	1/1	c0001	483	418	85	84	189	12	46	copy fasta	PMP22	chr17	15224779	15270326
PMP22_chr17_15224779_15270326	0/0	c0002	483	6	6	0	0	0	0	copy fasta	PMP22	chr17	15224779	15270326
PMP22_chr17_15224779_15270326	0/0	c0003	483	1	0	0	1	0	0	copy fasta	PMP22	chr17	15224779	15270326
PMP22_chr17_15224779_15270326	0/0	c0004	483	1	1	0	0	0	0	copy fasta	PMP22	chr17	15224779	15270326
PMP2_chr8_81435326_81452439	0/0	c0001	399	226	31	29	156	1	9	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	1/1	c0002	399	194	60	44	48	11	29	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	c0003	399	6	5	1	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	c0004	399	1	0	1	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMP2_chr8_81435326_81452439	0/0	c0005	399	1	0	1	0	0	0	copy fasta	PMP2	chr8	81435326	81452439
PMPCA_chr9_136405658_136428761	1/0	c0001	1578	249	83	38	98	10	19	copy fasta	PMPCA	chr9	136405658	136428761
PMPCA_chr9_136405658_136428761	0/0	c0002	1578	77	10	21	32	2	12	copy fasta	PMPCA	chr9	136405658	136428761
PMPCA_chr9_136405658_136428761	0/1	c0003	1578	58	5	19	23	5	5	copy fasta	PMPCA	chr9	136405658	136428761
PMPCA_chr9_136405658_136428761	0/0	c0004	1578	2	0	0	2	0	0	copy fasta	PMPCA	chr9	136405658	136428761
PMPCA_chr9_136405658_136428761	0/0	c0005	1578	1	1	0	0	0	0	copy fasta	PMPCA	chr9	136405658	136428761
PMPCA_chr9_136405658_136428761	0/0	c0006	1578	1	0	0	1	0	0	copy fasta	PMPCA	chr9	136405658	136428761
PMPCA_chr9_136405658_136428761	0/0	c0007	1578	1	1	0	0	0	0	copy fasta	PMPCA	chr9	136405658	136428761
PMPCA_chr9_136405658_136428761	0/0	c0008	1578	1	0	0	0	1	0	copy fasta	PMPCA	chr9	136405658	136428761
PMPCB_chr7_103292435_103319686	1/1	c0001	1470	348	59	62	174	12	39	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	c0002	1470	32	0	7	19	1	5	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	c0003	1470	31	29	2	0	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	c0004	1470	8	0	0	8	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	c0005	1470	7	0	0	7	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	c0006	1470	2	0	2	0	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	c0007	1470	1	1	0	0	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	c0008	1470	1	1	0	0	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	c0009	1470	1	0	0	1	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	c0010	1470	1	0	1	0	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	c0011	1470	1	0	0	0	1	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	c0012	1470	1	1	0	0	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	c0013	1470	1	1	0	0	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMPCB_chr7_103292435_103319686	0/0	c0014	1470	1	0	0	1	0	0	copy fasta	PMPCB	chr7	103292435	103319686
PMS1_chr2_189779450_189882629	1/1	c0001	2799	214	77	33	72	8	22	copy fasta	PMS1	chr2	189779450	189882629
PMS1_chr2_189779450_189882629	0/0	c0002	2799	6	5	1	0	0	0	copy fasta	PMS1	chr2	189779450	189882629
PMS1_chr2_189779450_189882629	0/0	c0003	2799	4	3	1	0	0	0	copy fasta	PMS1	chr2	189779450	189882629