JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PMS1_chr2_189779450_189882629	0/0	c0004	2799	2	2	0	0	0	0	copy fasta	PMS1	chr2	189779450	189882629
PMS1_chr2_189779450_189882629	0/0	c0005	2799	2	2	0	0	0	0	copy fasta	PMS1	chr2	189779450	189882629
PMS1_chr2_189779450_189882629	0/0	c0006	2799	1	1	0	0	0	0	copy fasta	PMS1	chr2	189779450	189882629
PMS1_chr2_189779450_189882629	0/0	c0007	2799	1	1	0	0	0	0	copy fasta	PMS1	chr2	189779450	189882629
PMS1_chr2_189779450_189882629	0/0	c0008	2799	1	1	0	0	0	0	copy fasta	PMS1	chr2	189779450	189882629
PMS1_chr2_189779450_189882629	0/0	c0009	2799	1	0	1	0	0	0	copy fasta	PMS1	chr2	189779450	189882629
PMS1_chr2_189779450_189882629	0/0	c0010	2799	1	1	0	0	0	0	copy fasta	PMS1	chr2	189779450	189882629
PMS1_chr2_189779450_189882629	0/0	c0011	2799	1	1	0	0	0	0	copy fasta	PMS1	chr2	189779450	189882629
PMS2_chr7_5965925_6014049	0/0	c0001	2589	79	1	1	65	0	12	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0002	2589	55	3	10	36	2	4	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0003	2589	47	13	11	13	6	4	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0004	2589	41	7	10	14	2	8	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	1/0	c0005	2589	38	6	14	14	1	2	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/1	c0006	2589	29	8	12	2	2	4	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0007	2589	18	0	2	14	0	2	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0008	2589	11	11	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0009	2589	10	10	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0010	2589	9	8	1	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0011	2589	9	0	0	9	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0012	2589	7	0	3	4	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0013	2589	6	1	1	4	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0014	2589	4	2	1	1	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0015	2589	3	2	1	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0016	2589	3	3	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0017	2589	3	3	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0018	2589	3	0	2	0	0	1	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0019	2589	2	2	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0020	2589	2	2	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0021	2589	2	2	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0022	2589	2	0	0	0	0	2	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0023	2589	2	0	0	2	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0024	2589	2	0	2	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0025	2589	1	1	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0026	2589	1	0	0	0	0	1	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0027	2589	1	1	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0028	2589	1	0	0	1	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0029	2589	1	0	1	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0030	2589	1	0	0	0	0	1	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0031	2589	1	0	0	0	0	1	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0032	2589	1	0	0	1	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0033	2589	1	1	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0034	2589	1	1	0	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0035	2589	1	0	1	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0036	2552	1	0	0	1	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0037	2589	1	0	0	1	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0038	2589	1	0	0	0	1	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0039	2589	1	0	1	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0040	2589	1	0	1	0	0	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0041	2589	1	0	0	0	1	0	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0042	2589	1	0	1	0	0	0	copy fasta	PMS2	chr7	5965925	6014049