JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PMS2_chr7_5965925_6014049	0/0	c0043	2589	1	0	0	0	0	1	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0044	2589	1	0	0	0	0	1	copy fasta	PMS2	chr7	5965925	6014049
PMS2_chr7_5965925_6014049	0/0	c0045	2589	1	0	0	0	1	0	copy fasta	PMS2	chr7	5965925	6014049
PMVK_chr1_154919740_154941719	1/1	c0001	579	210	25	46	94	10	33	copy fasta	PMVK	chr1	154919740	154941719
PMVK_chr1_154919740_154941719	0/0	c0002	579	44	35	6	0	2	1	copy fasta	PMVK	chr1	154919740	154941719
PMVK_chr1_154919740_154941719	0/0	c0003	579	28	27	1	0	0	0	copy fasta	PMVK	chr1	154919740	154941719
PMVK_chr1_154919740_154941719	0/0	c0004	579	4	4	0	0	0	0	copy fasta	PMVK	chr1	154919740	154941719
PMVK_chr1_154919740_154941719	0/0	c0005	579	2	0	0	0	0	2	copy fasta	PMVK	chr1	154919740	154941719
PMVK_chr1_154919740_154941719	0/0	c0006	579	1	0	1	0	0	0	copy fasta	PMVK	chr1	154919740	154941719
PMVK_chr1_154919740_154941719	0/0	c0007	579	1	1	0	0	0	0	copy fasta	PMVK	chr1	154919740	154941719
PMVK_chr1_154919740_154941719	0/0	c0008	579	1	1	0	0	0	0	copy fasta	PMVK	chr1	154919740	154941719
PMVK_chr1_154919740_154941719	0/0	c0009	579	1	1	0	0	0	0	copy fasta	PMVK	chr1	154919740	154941719
PMVK_chr1_154919740_154941719	0/0	c0010	579	1	1	0	0	0	0	copy fasta	PMVK	chr1	154919740	154941719
PMVK_chr1_154919740_154941719	0/0	c0011	579	1	1	0	0	0	0	copy fasta	PMVK	chr1	154919740	154941719
PNCK_chrX_153664733_153678813	1/1	c0001	1032	272	75	45	114	11	25	copy fasta	PNCK	chrX	153664733	153678813
PNCK_chrX_153664733_153678813	0/0	c0002	1033	2	1	0	0	0	1	copy fasta	PNCK	chrX	153664733	153678813
PNCK_chrX_153664733_153678813	0/0	c0003	1032	1	0	0	1	0	0	copy fasta	PNCK	chrX	153664733	153678813
PNCK_chrX_153664733_153678813	0/0	c0004	1032	1	0	1	0	0	0	copy fasta	PNCK	chrX	153664733	153678813
PNISR_chr6_99393050_99430308	1/1	c0001	2418	391	85	82	166	13	43	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	c0002	2418	2	0	0	2	0	0	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	c0003	2418	2	0	0	2	0	0	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	c0004	2418	1	0	0	0	0	1	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	c0005	2418	1	0	0	1	0	0	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	c0006	2418	1	0	0	1	0	0	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	c0007	2418	1	0	0	1	0	0	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	c0008	2418	1	1	0	0	0	0	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	c0009	2418	1	0	0	0	0	1	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	c0010	2418	1	0	0	1	0	0	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	c0011	2418	1	0	0	0	0	1	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	c0012	2418	1	0	0	1	0	0	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	c0013	2418	1	0	0	1	0	0	copy fasta	PNISR	chr6	99393050	99430308
PNISR_chr6_99393050_99430308	0/0	c0014	2418	1	0	0	0	1	0	copy fasta	PNISR	chr6	99393050	99430308
PNKD_chr2_218265519_218351793	1/1	c0001	1158	250	75	53	87	8	25	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/0	c0002	1158	18	10	4	1	1	2	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/0	c0003	1158	3	3	0	0	0	0	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/0	c0004	1158	2	0	1	0	1	0	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/0	c0005	1158	2	0	0	0	2	0	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/0	c0006	1158	1	1	0	0	0	0	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/0	c0007	1158	1	0	0	1	0	0	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/0	c0008	1158	1	1	0	0	0	0	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/0	c0009	1158	1	0	0	1	0	0	copy fasta	PNKD	chr2	218265519	218351793
PNKD_chr2_218265519_218351793	0/0	c0010	1158	1	0	0	0	0	1	copy fasta	PNKD	chr2	218265519	218351793
PNKP_chr19_49856204_49872576	1/1	c0001	1566	395	79	75	179	12	48	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	c0002	1566	7	0	0	7	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	c0003	1566	5	0	0	5	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	c0004	1566	3	2	1	0	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	c0005	1566	3	0	0	3	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	c0006	1566	2	2	0	0	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	c0007	1566	2	2	0	0	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	c0008	1566	2	2	0	0	0	0	copy fasta	PNKP	chr19	49856204	49872576