JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PNKP_chr19_49856204_49872576	0/0	c0009	1566	1	1	0	0	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	c0010	1566	1	1	0	0	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	c0011	1566	1	0	0	0	0	1	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	c0012	1566	1	0	0	1	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	c0013	1566	1	1	0	0	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	c0014	1566	1	0	0	0	0	1	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	c0015	1566	1	0	0	1	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	c0016	1566	1	1	0	0	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	c0017	1566	1	0	0	1	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	c0018	1566	1	0	0	1	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNKP_chr19_49856204_49872576	0/0	c0019	1566	1	1	0	0	0	0	copy fasta	PNKP	chr19	49856204	49872576
PNLDC1_chr6_159795276_159825704	1/0	c0001	1596	250	59	28	135	5	22	copy fasta	PNLDC1	chr6	159795276	159825704
PNLDC1_chr6_159795276_159825704	0/1	c0002	1596	128	28	43	31	10	15	copy fasta	PNLDC1	chr6	159795276	159825704
PNLDC1_chr6_159795276_159825704	0/0	c0003	1596	6	0	2	0	1	3	copy fasta	PNLDC1	chr6	159795276	159825704
PNLDC1_chr6_159795276_159825704	0/0	c0004	1596	4	3	1	0	0	0	copy fasta	PNLDC1	chr6	159795276	159825704
PNLDC1_chr6_159795276_159825704	0/0	c0005	1596	2	0	0	2	0	0	copy fasta	PNLDC1	chr6	159795276	159825704
PNLDC1_chr6_159795276_159825704	0/0	c0006	1596	2	0	0	0	0	2	copy fasta	PNLDC1	chr6	159795276	159825704
PNLDC1_chr6_159795276_159825704	0/0	c0007	1596	1	0	0	1	0	0	copy fasta	PNLDC1	chr6	159795276	159825704
PNLDC1_chr6_159795276_159825704	0/0	c0008	1596	1	0	0	1	0	0	copy fasta	PNLDC1	chr6	159795276	159825704
PNLDC1_chr6_159795276_159825704	0/0	c0009	1596	1	0	0	0	0	1	copy fasta	PNLDC1	chr6	159795276	159825704
PNLDC1_chr6_159795276_159825704	0/0	c0010	1596	1	1	0	0	0	0	copy fasta	PNLDC1	chr6	159795276	159825704
PNLDC1_chr6_159795276_159825704	0/0	c0011	1596	1	0	0	1	0	0	copy fasta	PNLDC1	chr6	159795276	159825704
PNLDC1_chr6_159795276_159825704	0/0	c0012	1596	1	1	0	0	0	0	copy fasta	PNLDC1	chr6	159795276	159825704
PNLDC1_chr6_159795276_159825704	0/0	c0013	1611	1	0	0	0	0	1	copy fasta	PNLDC1	chr6	159795276	159825704
PNLDC1_chr6_159795276_159825704	0/0	c0014	1596	1	0	0	1	0	0	copy fasta	PNLDC1	chr6	159795276	159825704
PNLIPRP1_chr10_116585959_116614175	0/0	c0001	1404	163	44	47	47	3	22	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP1_chr10_116585959_116614175	1/1	c0002	1404	87	28	13	24	7	13	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP1_chr10_116585959_116614175	0/0	c0003	1404	72	1	2	64	1	4	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP1_chr10_116585959_116614175	0/0	c0004	1404	42	3	11	26	0	2	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP1_chr10_116585959_116614175	0/0	c0005	1404	19	0	0	19	0	0	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP1_chr10_116585959_116614175	0/0	c0006	1404	9	7	2	0	0	0	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP1_chr10_116585959_116614175	0/0	c0007	1404	5	0	5	0	0	0	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP1_chr10_116585959_116614175	0/0	c0008	1404	4	4	0	0	0	0	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP1_chr10_116585959_116614175	0/0	c0009	1404	4	0	0	0	2	2	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP1_chr10_116585959_116614175	0/0	c0010	1404	3	3	0	0	0	0	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP1_chr10_116585959_116614175	0/0	c0011	1404	3	3	0	0	0	0	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP1_chr10_116585959_116614175	0/0	c0012	1404	2	0	0	0	2	0	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP1_chr10_116585959_116614175	0/0	c0013	1404	2	0	1	0	0	1	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP1_chr10_116585959_116614175	0/0	c0014	1404	1	0	0	1	0	0	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP1_chr10_116585959_116614175	0/0	c0015	1404	1	0	0	0	1	0	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP1_chr10_116585959_116614175	0/0	c0016	1404	1	0	0	1	0	0	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP1_chr10_116585959_116614175	0/0	c0017	1404	1	1	0	0	0	0	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP1_chr10_116585959_116614175	0/0	c0018	1404	1	0	1	0	0	0	copy fasta	PNLIPRP1	chr10	116585959	116614175
PNLIPRP3_chr10_116422847_116482957	0/1	c0001	1404	121	33	17	47	6	17	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	c0002	1404	53	13	1	38	0	1	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	c0003	1404	41	8	0	29	0	4	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	c0004	1404	14	4	3	7	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	c0005	1404	11	1	6	4	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	c0006	1404	10	10	0	0	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	1/0	c0007	1404	10	9	0	0	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957