JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PNLIPRP3_chr10_116422847_116482957	0/0	c0008	1404	7	0	5	2	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	c0009	1404	5	0	5	0	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	c0010	1404	3	0	0	3	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	c0011	1404	3	3	0	0	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	c0012	1404	1	1	0	0	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	c0013	1404	1	1	0	0	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	c0014	1404	1	0	1	0	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	c0015	1404	1	1	0	0	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	c0016	1404	1	0	1	0	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	c0017	1404	1	0	0	1	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	c0018	1404	1	1	0	0	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	c0019	1404	1	1	0	0	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	c0020	1404	1	0	1	0	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIPRP3_chr10_116422847_116482957	0/0	c0021	1404	1	0	0	1	0	0	copy fasta	PNLIPRP3	chr10	116422847	116482957
PNLIP_chr10_116540931_116572855	0/0	c0001	1398	170	62	28	55	2	23	copy fasta	PNLIP	chr10	116540931	116572855
PNLIP_chr10_116540931_116572855	1/0	c0002	1398	86	13	10	60	0	2	copy fasta	PNLIP	chr10	116540931	116572855
PNLIP_chr10_116540931_116572855	0/0	c0003	1398	7	0	0	7	0	0	copy fasta	PNLIP	chr10	116540931	116572855
PNLIP_chr10_116540931_116572855	0/0	c0004	1398	2	2	0	0	0	0	copy fasta	PNLIP	chr10	116540931	116572855
PNLIP_chr10_116540931_116572855	0/0	c0005	1398	2	2	0	0	0	0	copy fasta	PNLIP	chr10	116540931	116572855
PNLIP_chr10_116540931_116572855	0/0	c0006	1398	2	2	0	0	0	0	copy fasta	PNLIP	chr10	116540931	116572855
PNLIP_chr10_116540931_116572855	0/0	c0007	1398	1	0	0	1	0	0	copy fasta	PNLIP	chr10	116540931	116572855
PNLIP_chr10_116540931_116572855	0/1	c0008	1398	1	0	0	0	0	0	copy fasta	PNLIP	chr10	116540931	116572855
PNLIP_chr10_116540931_116572855	0/0	c0009	1398	1	1	0	0	0	0	copy fasta	PNLIP	chr10	116540931	116572855
PNLIP_chr10_116540931_116572855	0/0	c0010	1398	1	0	0	0	0	1	copy fasta	PNLIP	chr10	116540931	116572855
PNLIP_chr10_116540931_116572855	0/0	c0011	1398	1	0	0	1	0	0	copy fasta	PNLIP	chr10	116540931	116572855
PNLIP_chr10_116540931_116572855	0/0	c0012	1436	1	0	0	1	0	0	copy fasta	PNLIP	chr10	116540931	116572855
PNLIP_chr10_116540931_116572855	0/0	c0013	1398	1	0	0	1	0	0	copy fasta	PNLIP	chr10	116540931	116572855
PNMA1_chr14_73706783_73719384	1/1	c0001	1062	401	86	75	186	14	38	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	0/0	c0002	1062	5	4	1	0	0	0	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	0/0	c0003	1062	3	3	0	0	0	0	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	0/0	c0004	1062	1	1	0	0	0	0	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	0/0	c0005	1062	1	0	0	0	0	1	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	0/0	c0006	1062	1	0	0	0	0	1	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	0/0	c0007	1062	1	0	1	0	0	0	copy fasta	PNMA1	chr14	73706783	73719384
PNMA1_chr14_73706783_73719384	0/0	c0008	1062	1	0	1	0	0	0	copy fasta	PNMA1	chr14	73706783	73719384
PNMA2_chr8_26499701_26518872	1/1	c0001	1095	323	83	58	123	15	42	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	c0002	1095	87	7	16	57	1	6	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	c0003	1095	2	0	0	0	0	2	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	c0004	1095	1	1	0	0	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	c0005	1095	1	1	0	0	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	c0006	1095	1	0	0	1	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA2_chr8_26499701_26518872	0/0	c0007	1095	1	0	0	1	0	0	copy fasta	PNMA2	chr8	26499701	26518872
PNMA3_chrX_153051470_153065462	1/1	c0001	1392	291	65	57	131	8	28	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	c0002	1392	23	7	7	4	1	4	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	c0003	1392	6	5	1	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	c0004	1392	1	1	0	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	c0005	1393	1	0	0	1	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	c0006	1392	1	1	0	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	c0007	1396	1	0	0	1	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA3_chrX_153051470_153065462	0/0	c0008	1393	1	1	0	0	0	0	copy fasta	PNMA3	chrX	153051470	153065462