JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ARL5B_chr10_18654431_18686639	0/0	c0005	540	1	0	0	1	0	0	copy fasta	ARL5B	chr10	18654431	18686639
ARL5C_chr17_39151894_39171161	1/1	c0001	540	273	29	65	130	13	34	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	c0002	540	54	1	3	44	4	2	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	c0003	540	27	21	5	0	1	0	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	c0004	540	22	22	0	0	0	0	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	c0005	540	10	9	1	0	0	0	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	c0006	540	7	6	1	0	0	0	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	c0007	540	6	5	1	0	0	0	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	c0008	540	2	0	0	0	0	2	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	c0009	540	2	0	0	2	0	0	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	c0010	553	1	0	0	1	0	0	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	c0011	540	1	1	0	0	0	0	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	c0012	540	1	1	0	0	0	0	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	c0013	540	1	0	0	0	0	1	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	c0014	540	1	1	0	0	0	0	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	c0015	540	1	0	0	1	0	0	copy fasta	ARL5C	chr17	39151894	39171161
ARL5C_chr17_39151894_39171161	0/0	c0016	540	1	0	0	0	0	1	copy fasta	ARL5C	chr17	39151894	39171161
ARL6IP1_chr16_18786669_18806549	1/1	c0001	612	341	94	57	138	14	36	copy fasta	ARL6IP1	chr16	18786669	18806549
ARL6IP1_chr16_18786669_18806549	0/0	c0002	612	2	2	0	0	0	0	copy fasta	ARL6IP1	chr16	18786669	18806549
ARL6IP1_chr16_18786669_18806549	0/0	c0003	612	1	0	1	0	0	0	copy fasta	ARL6IP1	chr16	18786669	18806549
ARL6IP4_chr12_122975681_122987909	1/1	c0001	714	322	65	58	149	9	39	copy fasta	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	c0002	714	24	22	2	0	0	0	copy fasta	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	c0003	714	3	0	0	3	0	0	copy fasta	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	c0004	714	2	2	0	0	0	0	copy fasta	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	c0005	714	1	0	0	0	1	0	copy fasta	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	c0006	737	1	0	0	1	0	0	copy fasta	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	c0007	714	1	0	0	0	0	1	copy fasta	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	c0008	714	1	1	0	0	0	0	copy fasta	ARL6IP4	chr12	122975681	122987909
ARL6IP4_chr12_122975681_122987909	0/0	c0009	714	1	0	0	1	0	0	copy fasta	ARL6IP4	chr12	122975681	122987909
ARL6IP5_chr3_69079937_69111092	1/0	c0001	567	306	69	61	122	17	36	copy fasta	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/1	c0002	567	125	22	3	90	1	8	copy fasta	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	c0003	567	2	2	0	0	0	0	copy fasta	ARL6IP5	chr3	69079937	69111092
ARL6IP5_chr3_69079937_69111092	0/0	c0004	567	1	1	0	0	0	0	copy fasta	ARL6IP5	chr3	69079937	69111092
ARL6IP6_chr2_152713620_152767396	1/1	c0001	681	385	92	69	158	16	48	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	c0002	681	2	2	0	0	0	0	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	c0003	681	2	0	2	0	0	0	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6IP6_chr2_152713620_152767396	0/0	c0004	681	1	0	1	0	0	0	copy fasta	ARL6IP6	chr2	152713620	152767396
ARL6_chr3_97759758_97806229	1/1	c0001	561	359	92	71	138	16	40	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	c0002	561	1	1	0	0	0	0	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	c0003	561	1	0	0	1	0	0	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	c0004	561	1	0	1	0	0	0	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	c0005	561	1	1	0	0	0	0	copy fasta	ARL6	chr3	97759758	97806229
ARL6_chr3_97759758_97806229	0/0	c0006	561	1	0	0	1	0	0	copy fasta	ARL6	chr3	97759758	97806229
ARL8A_chr1_202128404_202149737	1/1	c0001	561	385	91	76	158	18	40	copy fasta	ARL8A	chr1	202128404	202149737
ARL8A_chr1_202128404_202149737	0/0	c0002	561	43	1	8	34	0	0	copy fasta	ARL8A	chr1	202128404	202149737
ARL8A_chr1_202128404_202149737	0/0	c0003	561	3	3	0	0	0	0	copy fasta	ARL8A	chr1	202128404	202149737
ARL8A_chr1_202128404_202149737	0/0	c0004	561	3	3	0	0	0	0	copy fasta	ARL8A	chr1	202128404	202149737
ARL8A_chr1_202128404_202149737	0/0	c0005	561	2	0	0	0	0	2	copy fasta	ARL8A	chr1	202128404	202149737
ARL8B_chr3_5117292_5185911	1/1	c0001	561	303	78	56	124	6	37	copy fasta	ARL8B	chr3	5117292	5185911
ARL8B_chr3_5117292_5185911	0/0	c0002	561	1	0	0	0	0	1	copy fasta	ARL8B	chr3	5117292	5185911