JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PNMA3_chrX_153051470_153065462	0/0	c0009	1391	1	0	0	1	0	0	copy fasta	PNMA3	chrX	153051470	153065462
PNMA5_chrX_152983824_152999116	1/1	c0001	1347	271	60	50	121	6	32	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	c0002	1347	7	6	1	0	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	c0003	1346	1	0	0	1	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	c0004	1346	1	0	0	1	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	c0005	1346	1	0	1	0	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	c0006	1347	1	0	0	1	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	c0007	1347	1	0	0	0	1	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	c0008	1347	1	0	0	1	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	c0009	1347	1	0	0	1	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA5_chrX_152983824_152999116	0/0	c0010	1340	1	0	0	1	0	0	copy fasta	PNMA5	chrX	152983824	152999116
PNMA6A_chrX_153067454_153080019	1/0	c0001	1200	26	7	4	7	3	4	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	c0002	1200	24	0	5	18	0	1	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	c0003	1200	6	1	0	5	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	c0004	1201	5	1	1	2	0	1	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/1	c0005	1200	5	1	0	0	1	2	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	c0006	1200	2	2	0	0	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	c0007	1201	1	0	0	0	0	1	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	c0008	1205	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	c0009	1200	1	0	1	0	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	c0010	1201	1	0	1	0	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	c0011	1200	1	0	0	0	0	1	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	c0012	1207	1	1	0	0	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	c0013	1201	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	c0014	1200	1	1	0	0	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	c0015	1200	1	1	0	0	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	c0016	1201	1	0	1	0	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	c0017	1202	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	c0018	1205	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	c0019	1200	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	c0020	1201	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	c0021	1209	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	c0022	1207	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	c0023	1202	1	1	0	0	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6A_chrX_153067454_153080019	0/0	c0024	1204	1	0	0	1	0	0	copy fasta	PNMA6A	chrX	153067454	153080019
PNMA6E_chrX_153390639_153406350	0/1	c0001	1944	154	24	28	79	6	16	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	1/0	c0002	1944	126	32	25	50	3	15	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0003	1980	13	0	10	0	1	2	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0004	1962	9	5	0	4	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0005	1962	5	1	0	4	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0006	1944	4	0	0	4	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0007	1890	3	2	1	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0008	1944	3	3	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0009	1944	2	0	0	2	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0010	1962	2	2	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0011	1944	2	2	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0012	1944	2	0	0	2	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0013	1926	2	2	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0014	1944	1	0	0	0	0	1	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0015	1960	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350