JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PNMA6E_chrX_153390639_153406350	0/0	c0016	1943	1	1	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0017	1944	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0018	1944	1	1	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0019	1944	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0020	1933	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0021	1945	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0022	1944	1	0	0	0	1	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0023	1944	1	1	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0024	1944	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0025	1944	1	1	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0026	1945	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0027	1945	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0028	1944	1	1	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0029	1944	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0030	1926	1	1	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0031	1944	1	1	0	0	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6E_chrX_153390639_153406350	0/0	c0032	1944	1	0	0	1	0	0	copy fasta	PNMA6E	chrX	153390639	153406350
PNMA6F_chrX_153312680_153326767	1/1	c0001	1737	123	15	35	41	7	23	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	c0002	1737	109	24	15	60	2	8	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	c0003	1737	67	25	1	40	0	1	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	c0004	1737	4	0	1	1	2	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	c0005	1737	4	4	0	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	c0006	1737	4	4	0	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	c0007	1737	2	0	2	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	c0008	1737	2	2	0	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	c0009	1737	2	2	0	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	c0010	1737	1	0	1	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	c0011	1736	1	0	0	1	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	c0012	1734	1	0	0	1	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	c0013	1737	1	1	0	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	c0014	1737	1	1	0	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	c0015	1739	1	0	0	1	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	c0016	1737	1	1	0	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	c0017	1737	1	0	0	0	0	1	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	c0018	1740	1	0	0	1	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	c0019	1737	1	0	0	0	0	1	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	c0020	1740	1	0	0	1	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	c0021	1741	1	0	0	1	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	c0022	1737	1	0	1	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA6F_chrX_153312680_153326767	0/0	c0023	1737	1	1	0	0	0	0	copy fasta	PNMA6F	chrX	153312680	153326767
PNMA8A_chr19_46461503_46476563	1/1	c0001	1320	324	47	64	165	9	37	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	c0002	1320	79	23	13	25	8	10	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	c0003	1320	18	13	3	1	0	1	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	c0004	1320	7	0	0	7	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	c0005	1320	6	5	1	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	c0006	1320	3	2	1	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	c0007	1320	3	0	0	3	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	c0008	1320	2	2	0	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	c0009	1320	2	2	0	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	c0010	1320	1	1	0	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563