JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PNMA8A_chr19_46461503_46476563	0/0	c0011	1320	1	0	0	0	1	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	c0012	1320	1	0	0	0	0	1	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	c0013	1320	1	0	0	0	0	1	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	c0014	1320	1	0	0	1	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	c0015	1320	1	0	0	1	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	c0016	1320	1	1	0	0	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	c0017	1320	1	0	0	1	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	c0018	1320	1	0	0	1	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8A_chr19_46461503_46476563	0/0	c0019	1320	1	0	0	1	0	0	copy fasta	PNMA8A	chr19	46461503	46476563
PNMA8B_chr19_46486191_46500867	1/1	c0001	1908	281	54	46	133	9	37	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	c0002	1908	82	10	14	54	0	4	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	c0003	1914	23	4	13	2	3	1	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	c0004	1908	6	5	1	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	c0005	1908	4	4	0	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	c0006	1908	4	4	0	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	c0007	1908	4	3	1	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	c0008	1908	3	0	0	3	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	c0009	1908	2	1	0	0	0	1	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	c0010	1908	2	0	2	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	c0011	1908	2	2	0	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	c0012	1908	1	0	0	1	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	c0013	1908	1	0	0	1	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	c0014	1908	1	1	0	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	c0015	1908	1	0	0	1	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	c0016	1908	1	0	0	1	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	c0017	1908	1	1	0	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	c0018	1908	1	0	0	1	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	c0019	1908	1	0	0	0	0	1	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	c0020	1914	1	1	0	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	c0021	1908	1	1	0	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	c0022	1908	1	0	1	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	c0023	1908	1	1	0	0	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8B_chr19_46486191_46500867	0/0	c0024	1908	1	0	0	1	0	0	copy fasta	PNMA8B	chr19	46486191	46500867
PNMA8C_chr19_46419697_46433936	1/1	c0001	615	407	80	76	184	17	48	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	c0002	615	28	17	3	8	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	c0003	615	4	3	1	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	c0004	615	2	0	1	0	1	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMA8C_chr19_46419697_46433936	0/0	c0005	615	1	0	1	0	0	0	copy fasta	PNMA8C	chr19	46419697	46433936
PNMT_chr17_39663453_39675475	1/1	c0001	849	344	60	78	153	18	33	copy fasta	PNMT	chr17	39663453	39675475
PNMT_chr17_39663453_39675475	0/0	c0002	849	23	21	1	0	0	1	copy fasta	PNMT	chr17	39663453	39675475
PNMT_chr17_39663453_39675475	0/0	c0003	849	3	3	0	0	0	0	copy fasta	PNMT	chr17	39663453	39675475
PNMT_chr17_39663453_39675475	0/0	c0004	849	2	2	0	0	0	0	copy fasta	PNMT	chr17	39663453	39675475
PNMT_chr17_39663453_39675475	0/0	c0005	849	1	0	0	1	0	0	copy fasta	PNMT	chr17	39663453	39675475
PNMT_chr17_39663453_39675475	0/0	c0006	849	1	0	1	0	0	0	copy fasta	PNMT	chr17	39663453	39675475
PNMT_chr17_39663453_39675475	0/0	c0007	849	1	1	0	0	0	0	copy fasta	PNMT	chr17	39663453	39675475
PNMT_chr17_39663453_39675475	0/0	c0008	849	1	1	0	0	0	0	copy fasta	PNMT	chr17	39663453	39675475
PNN_chr14_39170254_39188220	0/0	c0001	2154	188	55	29	81	8	15	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	0/0	c0002	2154	80	0	17	42	3	18	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	0/0	c0003	2154	68	0	6	59	1	2	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	0/0	c0004	2154	52	16	13	14	3	6	copy fasta	PNN	chr14	39170254	39188220