JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PNN_chr14_39170254_39188220	1/1	c0005	2154	39	7	16	8	3	3	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	0/0	c0006	2154	6	6	0	0	0	0	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	0/0	c0007	2154	5	5	0	0	0	0	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	0/0	c0008	2154	1	1	0	0	0	0	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	0/0	c0009	2154	1	1	0	0	0	0	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	0/0	c0010	2154	1	0	1	0	0	0	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	0/0	c0011	2154	1	1	0	0	0	0	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	0/0	c0012	2154	1	1	0	0	0	0	copy fasta	PNN	chr14	39170254	39188220
PNN_chr14_39170254_39188220	0/0	c0013	2154	1	1	0	0	0	0	copy fasta	PNN	chr14	39170254	39188220
PNO1_chr2_68152888_68181238	0/0	c0001	759	165	73	29	42	4	17	copy fasta	PNO1	chr2	68152888	68181238
PNO1_chr2_68152888_68181238	1/1	c0002	759	132	2	26	82	5	15	copy fasta	PNO1	chr2	68152888	68181238
PNO1_chr2_68152888_68181238	0/0	c0003	759	130	6	29	76	5	14	copy fasta	PNO1	chr2	68152888	68181238
PNO1_chr2_68152888_68181238	0/0	c0004	759	8	7	1	0	0	0	copy fasta	PNO1	chr2	68152888	68181238
PNO1_chr2_68152888_68181238	0/0	c0005	759	8	8	0	0	0	0	copy fasta	PNO1	chr2	68152888	68181238
PNO1_chr2_68152888_68181238	0/0	c0006	759	1	0	1	0	0	0	copy fasta	PNO1	chr2	68152888	68181238
PNOC_chr8_28312268_28348351	1/1	c0001	531	386	92	78	166	10	38	copy fasta	PNOC	chr8	28312268	28348351
PNOC_chr8_28312268_28348351	0/0	c0002	531	34	0	0	30	0	4	copy fasta	PNOC	chr8	28312268	28348351
PNOC_chr8_28312268_28348351	0/0	c0003	531	1	0	1	0	0	0	copy fasta	PNOC	chr8	28312268	28348351
PNOC_chr8_28312268_28348351	0/0	c0004	531	1	0	1	0	0	0	copy fasta	PNOC	chr8	28312268	28348351
PNOC_chr8_28312268_28348351	0/0	c0005	531	1	0	0	1	0	0	copy fasta	PNOC	chr8	28312268	28348351
PNOC_chr8_28312268_28348351	0/0	c0006	531	1	0	0	1	0	0	copy fasta	PNOC	chr8	28312268	28348351
PNPLA1_chr6_36265060_36318955	0/0	c0001	1719	76	14	7	49	1	5	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/1	c0002	1719	49	1	9	27	4	7	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0003	1719	47	16	15	11	2	3	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0004	1719	30	16	3	7	1	3	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0005	1719	26	0	14	10	2	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	1/0	c0006	1719	23	1	4	13	0	4	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0007	1719	23	12	2	2	0	7	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0008	1719	18	6	5	5	1	1	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0009	1719	13	5	1	4	0	3	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0010	1719	12	0	5	1	1	5	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0011	1719	11	0	0	9	0	2	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0012	1719	8	1	1	5	0	1	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0013	1719	5	1	0	3	0	1	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0014	1719	4	0	1	3	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0015	1719	4	4	0	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0016	1719	3	3	0	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0017	1719	3	0	0	3	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0018	1719	3	3	0	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0019	1719	3	0	1	0	2	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0020	1719	2	2	0	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0021	1719	2	0	0	0	0	2	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0022	1719	2	2	0	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0023	1719	2	0	0	0	0	2	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0024	1719	1	0	0	0	0	1	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0025	1719	1	0	0	0	0	1	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0026	1719	1	0	0	1	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0027	1707	1	0	0	1	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0028	1719	1	1	0	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0029	1719	1	1	0	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955