JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PNPLA1_chr6_36265060_36318955	0/0	c0030	1719	1	0	1	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0031	1719	1	0	0	1	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0032	1719	1	1	0	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0033	1719	1	0	0	1	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0034	1719	1	0	0	1	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0035	1719	1	0	0	1	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0036	1719	1	1	0	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0037	1719	1	1	0	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0038	1719	1	0	1	0	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0039	1719	1	0	0	1	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA1_chr6_36265060_36318955	0/0	c0040	1719	1	0	0	1	0	0	copy fasta	PNPLA1	chr6	36265060	36318955
PNPLA2_chr11_813914_830573	0/1	c0001	1515	157	32	43	67	10	4	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	c0002	1515	115	8	23	59	3	22	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	c0003	1515	60	20	6	28	2	4	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	c0004	1515	46	6	2	28	0	10	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	1/0	c0005	1515	28	17	3	0	2	5	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	c0006	1515	7	5	2	0	0	0	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	c0007	1515	6	0	0	6	0	0	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	c0008	1515	6	0	0	6	0	0	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	c0009	1515	5	0	0	4	1	0	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	c0010	1515	2	0	0	0	0	2	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	c0011	1515	1	0	0	1	0	0	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	c0012	1515	1	1	0	0	0	0	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	c0013	1515	1	1	0	0	0	0	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	c0014	1515	1	0	0	1	0	0	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	c0015	1515	1	1	0	0	0	0	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	c0016	1515	1	0	1	0	0	0	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	c0017	1515	1	0	0	1	0	0	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	c0018	1515	1	0	0	1	0	0	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	c0019	1515	1	1	0	0	0	0	copy fasta	PNPLA2	chr11	813914	830573
PNPLA2_chr11_813914_830573	0/0	c0020	1515	1	0	0	0	0	1	copy fasta	PNPLA2	chr11	813914	830573
PNPLA3_chr22_43918805_43952582	0/0	c0001	1446	162	54	16	73	4	15	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	c0002	1446	105	5	27	63	5	5	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	1/0	c0003	1446	67	9	16	24	4	13	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	c0004	1446	11	5	2	4	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	c0005	1446	10	2	3	3	0	2	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	c0006	1446	9	9	0	0	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	c0007	1446	9	2	3	1	1	2	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	c0008	1446	8	1	4	0	2	1	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	c0009	1446	7	0	0	5	0	2	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	c0010	1446	6	0	5	1	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	c0011	1446	6	6	0	0	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	c0012	1446	5	0	0	3	0	2	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	c0013	1446	3	3	0	0	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	c0014	1446	3	0	0	3	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	c0015	1446	1	0	0	1	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	c0016	1446	1	0	0	1	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	c0017	1446	1	1	0	0	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/1	c0018	1446	1	0	0	0	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	c0019	1446	1	0	0	1	0	0	copy fasta	PNPLA3	chr22	43918805	43952582