JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PNPLA3_chr22_43918805_43952582	0/0	c0020	1446	1	0	0	1	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	c0021	1446	1	1	0	0	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	c0022	1446	1	1	0	0	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA3_chr22_43918805_43952582	0/0	c0023	1446	1	1	0	0	0	0	copy fasta	PNPLA3	chr22	43918805	43952582
PNPLA4_chrX_7893247_7932413	1/1	c0001	762	332	71	59	161	9	30	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	c0002	762	3	0	1	2	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	c0003	762	1	0	0	1	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	c0004	762	1	1	0	0	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA4_chrX_7893247_7932413	0/0	c0005	761	1	0	0	1	0	0	copy fasta	PNPLA4	chrX	7893247	7932413
PNPLA5_chr22_43874678_43897013	1/0	c0001	1290	138	47	38	24	10	18	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	c0002	1290	110	8	16	80	2	4	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	c0003	1290	65	0	6	44	2	13	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	c0004	1290	64	8	7	41	1	7	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/1	c0005	1290	28	8	11	2	3	3	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	c0006	1290	8	5	3	0	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	c0007	1290	4	3	1	0	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	c0008	1290	3	3	0	0	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	c0009	1290	2	2	0	0	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	c0010	1290	1	1	0	0	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	c0011	1290	1	1	0	0	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	c0012	1290	1	1	0	0	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	c0013	1290	1	1	0	0	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	c0014	1290	1	1	0	0	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	c0015	1290	1	0	0	1	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	c0016	1290	1	1	0	0	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	c0017	1290	1	0	0	1	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	c0018	1290	1	1	0	0	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	c0019	1290	1	0	0	0	0	1	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	c0020	1290	1	1	0	0	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	c0021	1290	1	1	0	0	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	c0022	1290	1	1	0	0	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	c0023	1290	1	0	0	1	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	c0024	1290	1	0	0	1	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA5_chr22_43874678_43897013	0/0	c0025	1290	1	0	0	1	0	0	copy fasta	PNPLA5	chr22	43874678	43897013
PNPLA6_chr19_7530717_7566764	1/0	c0001	4098	275	45	44	159	5	21	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	c0002	4098	40	16	11	6	3	4	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	c0003	4098	26	7	9	0	5	5	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/1	c0004	4098	22	0	11	3	2	5	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	c0005	4098	10	2	2	0	1	5	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	c0006	4098	9	0	0	9	0	0	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	c0007	4098	6	2	3	0	0	1	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	c0008	4098	5	5	0	0	0	0	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	c0009	4098	5	5	0	0	0	0	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	c0010	4098	2	0	0	1	0	1	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	c0011	4098	2	2	0	0	0	0	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	c0012	4098	2	2	0	0	0	0	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	c0013	4098	1	0	0	1	0	0	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	c0014	4098	1	1	0	0	0	0	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	c0015	4098	1	1	0	0	0	0	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	c0016	4098	1	1	0	0	0	0	copy fasta	PNPLA6	chr19	7530717	7566764