JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PNPLA6_chr19_7530717_7566764	0/0	c0017	4098	1	0	0	0	0	1	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	c0018	4128	1	0	0	1	0	0	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	c0019	4098	1	1	0	0	0	0	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	c0020	4098	1	0	0	0	0	1	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	c0021	4086	1	0	0	1	0	0	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	c0022	4098	1	0	0	1	0	0	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	c0023	4098	1	0	1	0	0	0	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA6_chr19_7530717_7566764	0/0	c0024	4098	1	0	1	0	0	0	copy fasta	PNPLA6	chr19	7530717	7566764
PNPLA7_chr9_137454952_137555402	0/0	c0001	4029	56	12	7	26	2	9	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/1	c0002	4029	27	7	10	5	2	2	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0003	4029	11	1	0	8	0	2	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0004	4029	5	3	1	1	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0005	4029	5	0	0	4	0	1	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0006	4029	4	4	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0007	4029	4	4	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0008	4029	4	0	1	2	0	1	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0009	4029	3	0	0	3	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0010	4029	3	0	2	0	0	1	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0011	4029	3	2	1	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0012	4029	3	1	0	0	1	1	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0013	4029	3	3	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0014	4029	2	2	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0015	4029	2	2	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0016	4029	2	1	0	0	1	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0017	4029	2	1	1	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0018	4029	2	2	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0019	4029	2	2	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0020	4029	2	1	1	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0021	4029	2	2	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0022	4029	2	0	0	1	0	1	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0023	4029	2	2	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0024	4029	1	0	0	0	0	1	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0025	4029	1	0	0	0	0	1	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0026	4029	1	0	0	0	0	1	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0027	4029	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0028	4029	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0029	4029	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0030	4029	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0031	4029	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0032	4029	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0033	4029	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0034	4029	1	0	0	0	0	1	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0035	4029	1	0	0	1	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0036	4029	1	0	1	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0037	4029	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0038	4029	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0039	4029	1	0	0	0	0	1	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	1/0	c0040	4029	1	0	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0041	4029	1	0	1	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0042	4029	1	0	1	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402