JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PNPLA7_chr9_137454952_137555402	0/0	c0043	4029	1	0	0	0	0	1	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0044	4029	1	0	0	1	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0045	4029	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0046	4029	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0047	4029	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0048	4029	1	0	0	0	1	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0049	4029	1	0	0	0	1	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0050	3997	1	0	1	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0051	4029	1	0	0	1	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0052	4029	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0053	4029	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0054	4029	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0055	4029	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0056	4029	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0057	4029	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0058	4029	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0059	4029	1	1	0	0	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA7_chr9_137454952_137555402	0/0	c0060	4029	1	0	0	1	0	0	copy fasta	PNPLA7	chr9	137454952	137555402
PNPLA8_chr7_108465417_108531135	1/1	c0001	2349	370	80	64	172	12	40	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	c0002	2349	4	4	0	0	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	c0003	2349	3	3	0	0	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	c0004	2349	2	0	2	0	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	c0005	2349	2	2	0	0	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	c0006	2349	1	0	0	1	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	c0007	2349	1	0	0	1	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	c0008	2349	1	0	0	1	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	c0009	2349	1	0	0	1	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	c0010	2349	1	1	0	0	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	c0011	2349	1	1	0	0	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	c0012	2349	1	1	0	0	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	c0013	2349	1	1	0	0	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPLA8_chr7_108465417_108531135	0/0	c0014	2349	1	1	0	0	0	0	copy fasta	PNPLA8	chr7	108465417	108531135
PNPO_chr17_47936571_47954308	1/1	c0001	786	291	81	51	116	11	30	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	c0002	786	74	6	22	32	3	11	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	c0003	786	8	0	4	0	4	0	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	c0004	786	3	3	0	0	0	0	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	c0005	786	2	0	1	0	0	1	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	c0006	786	1	0	0	1	0	0	copy fasta	PNPO	chr17	47936571	47954308
PNPO_chr17_47936571_47954308	0/0	c0007	786	1	0	0	1	0	0	copy fasta	PNPO	chr17	47936571	47954308
PNPT1_chr2_55629061_55698844	1/0	c0001	2352	202	26	31	111	5	28	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	c0002	2352	115	35	29	37	5	9	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/1	c0003	2352	44	28	5	8	0	2	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	c0004	2352	12	1	5	0	0	6	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	c0005	2352	5	0	1	4	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	c0006	2352	1	1	0	0	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	c0007	2352	1	0	0	1	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	c0008	2352	1	0	0	0	0	1	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	c0009	2352	1	0	0	0	0	1	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	c0010	2352	1	0	0	0	0	1	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	c0011	2352	1	0	0	1	0	0	copy fasta	PNPT1	chr2	55629061	55698844