JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
PNPT1_chr2_55629061_55698844	0/0	c0012	2352	1	0	0	1	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	c0013	2352	1	1	0	0	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	c0014	2352	1	1	0	0	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	c0015	2352	1	1	0	0	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	c0016	2352	1	0	0	1	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNPT1_chr2_55629061_55698844	0/0	c0017	2352	1	0	1	0	0	0	copy fasta	PNPT1	chr2	55629061	55698844
PNP_chr14_20464406_20482089	1/1	c0001	870	340	70	64	159	14	31	copy fasta	PNP	chr14	20464406	20482089
PNP_chr14_20464406_20482089	0/0	c0002	870	79	20	9	41	4	5	copy fasta	PNP	chr14	20464406	20482089
PNP_chr14_20464406_20482089	0/0	c0003	870	20	0	4	15	0	1	copy fasta	PNP	chr14	20464406	20482089
PNP_chr14_20464406_20482089	0/0	c0004	870	3	2	1	0	0	0	copy fasta	PNP	chr14	20464406	20482089
PNP_chr14_20464406_20482089	0/0	c0005	870	2	2	0	0	0	0	copy fasta	PNP	chr14	20464406	20482089
PNP_chr14_20464406_20482089	0/0	c0006	870	1	1	0	0	0	0	copy fasta	PNP	chr14	20464406	20482089
PNP_chr14_20464406_20482089	0/0	c0007	870	1	1	0	0	0	0	copy fasta	PNP	chr14	20464406	20482089
PNP_chr14_20464406_20482089	0/0	c0008	870	1	0	0	1	0	0	copy fasta	PNP	chr14	20464406	20482089
PNP_chr14_20464406_20482089	0/0	c0009	870	1	0	0	0	0	1	copy fasta	PNP	chr14	20464406	20482089
PNRC1_chr6_89075751_89090160	1/0	c0001	984	226	70	54	67	13	21	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/1	c0002	984	156	18	23	100	0	14	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	c0003	984	2	2	0	0	0	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	c0004	984	2	0	0	0	2	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	c0005	984	1	1	0	0	0	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	c0006	984	1	1	0	0	0	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	c0007	984	1	1	0	0	0	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	c0008	984	1	0	1	0	0	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	c0009	984	1	1	0	0	0	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	c0010	984	1	0	0	0	1	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	c0011	984	1	0	0	1	0	0	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	c0012	984	1	0	0	0	0	1	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	c0013	984	1	0	0	0	0	1	copy fasta	PNRC1	chr6	89075751	89090160
PNRC1_chr6_89075751_89090160	0/0	c0014	984	1	0	0	0	0	1	copy fasta	PNRC1	chr6	89075751	89090160
PNRC2_chr1_23954828_23968462	1/1	c0001	420	393	78	71	188	13	41	copy fasta	PNRC2	chr1	23954828	23968462
PNRC2_chr1_23954828_23968462	0/0	c0002	420	18	12	3	0	1	2	copy fasta	PNRC2	chr1	23954828	23968462
PNRC2_chr1_23954828_23968462	0/0	c0003	420	1	0	0	0	0	1	copy fasta	PNRC2	chr1	23954828	23968462
POC1A_chr3_52070226_52159423	1/1	c0001	1224	268	55	49	126	8	28	copy fasta	POC1A	chr3	52070226	52159423
POC1A_chr3_52070226_52159423	0/0	c0002	1224	10	10	0	0	0	0	copy fasta	POC1A	chr3	52070226	52159423
POC1A_chr3_52070226_52159423	0/0	c0003	1224	4	4	0	0	0	0	copy fasta	POC1A	chr3	52070226	52159423
POC1A_chr3_52070226_52159423	0/0	c0004	1224	1	1	0	0	0	0	copy fasta	POC1A	chr3	52070226	52159423
POC1A_chr3_52070226_52159423	0/0	c0005	1224	1	1	0	0	0	0	copy fasta	POC1A	chr3	52070226	52159423
POC1A_chr3_52070226_52159423	0/0	c0006	1224	1	1	0	0	0	0	copy fasta	POC1A	chr3	52070226	52159423
POC1A_chr3_52070226_52159423	0/0	c0007	1224	1	0	1	0	0	0	copy fasta	POC1A	chr3	52070226	52159423
POC1B_chr12_89414718_89531047	1/1	c0001	1437	361	80	68	165	10	36	copy fasta	POC1B	chr12	89414718	89531047
POC1B_chr12_89414718_89531047	0/0	c0002	1437	5	0	0	5	0	0	copy fasta	POC1B	chr12	89414718	89531047
POC1B_chr12_89414718_89531047	0/0	c0003	1437	1	1	0	0	0	0	copy fasta	POC1B	chr12	89414718	89531047
POC1B_chr12_89414718_89531047	0/0	c0004	1437	1	1	0	0	0	0	copy fasta	POC1B	chr12	89414718	89531047
POC1B_chr12_89414718_89531047	0/0	c0005	1437	1	0	0	1	0	0	copy fasta	POC1B	chr12	89414718	89531047
POC1B_chr12_89414718_89531047	0/0	c0006	1437	1	0	0	1	0	0	copy fasta	POC1B	chr12	89414718	89531047
POC5_chr5_75669124_75722437	0/0	c0001	1728	113	36	24	40	4	9	copy fasta	POC5	chr5	75669124	75722437
POC5_chr5_75669124_75722437	1/1	c0002	1728	110	5	21	64	6	12	copy fasta	POC5	chr5	75669124	75722437
POC5_chr5_75669124_75722437	0/0	c0003	1728	96	15	11	59	1	10	copy fasta	POC5	chr5	75669124	75722437
POC5_chr5_75669124_75722437	0/0	c0004	1728	23	8	4	6	1	4	copy fasta	POC5	chr5	75669124	75722437
POC5_chr5_75669124_75722437	0/0	c0005	1728	21	16	5	0	0	0	copy fasta	POC5	chr5	75669124	75722437